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CDO & Magics Installation Problems » cdo.config.log

CDO Config Log - Kostas S, 2013-02-21 12:08

 
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cdo configure 1.6.0rc4, which was
generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --with-threads=/usr/local --with-zlib=/usr/local/ --with-szlib=/usr/local/ --with-hdf5=/usr/local/ --with-netcdf=/usr/local/ --with-jasper=/usr/local/ --with-grib_api=/usr/local/ --with-proj=/usr/local/ --with-udunits2=/usr/local/ --with-magics=/usr/local/ --with-libxml2=/usr/ --prefix=/usr/local/

## --------- ##
## Platform. ##
## --------- ##

hostname = diogenis.hydromech.tuc.gr
uname -m = i686
uname -r = 2.6.32-279.22.1.el6.i686
uname -s = Linux
uname -v = #1 SMP Sun Jan 13 09:20:24 EST 2013

/usr/bin/uname -p = unknown
/bin/uname -X = unknown

/bin/arch = i686
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown

PATH: /usr/lib/qt-3.3/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2567: checking build system type
configure:2581: result: i686-pc-linux-gnu
configure:2601: checking host system type
configure:2614: result: i686-pc-linux-gnu
configure:2652: checking for a BSD-compatible install
configure:2720: result: /usr/bin/install -c
configure:2731: checking whether build environment is sane
configure:2781: result: yes
configure:2922: checking for a thread-safe mkdir -p
configure:2961: result: /bin/mkdir -p
configure:2974: checking for gawk
configure:2990: found /bin/gawk
configure:3001: result: gawk
configure:3012: checking whether make sets $(MAKE)
configure:3034: result: yes
configure:3117: checking whether to enable maintainer-specific portions of Makefiles
configure:3126: result: no
configure:3141: setting up libtool
configure:3189: checking how to print strings
configure:3216: result: printf
configure:3249: checking for style of include used by make
configure:3277: result: GNU
configure:3348: checking for gcc
configure:3364: found /usr/bin/gcc
configure:3375: result: gcc
configure:3604: checking for C compiler version
configure:3613: gcc --version >&5
gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3624: $? = 0
configure:3613: gcc -v >&5
Using built-in specs.
Target: i686-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch=i686 --build=i686-redhat-linux
Thread model: posix
gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC)
configure:3624: $? = 0
configure:3613: gcc -V >&5
gcc: '-V' option must have argument
configure:3624: $? = 1
configure:3613: gcc -qversion >&5
gcc: unrecognized option '-qversion'
gcc: no input files
configure:3624: $? = 1
configure:3644: checking whether the C compiler works
configure:3666: gcc conftest.c >&5
configure:3670: $? = 0
configure:3718: result: yes
configure:3721: checking for C compiler default output file name
configure:3723: result: a.out
configure:3729: checking for suffix of executables
configure:3736: gcc -o conftest conftest.c >&5
configure:3740: $? = 0
configure:3762: result:
configure:3784: checking whether we are cross compiling
configure:3792: gcc -o conftest conftest.c >&5
configure:3796: $? = 0
configure:3803: ./conftest
configure:3807: $? = 0
configure:3822: result: no
configure:3827: checking for suffix of object files
configure:3849: gcc -c conftest.c >&5
configure:3853: $? = 0
configure:3874: result: o
configure:3878: checking whether we are using the GNU C compiler
configure:3897: gcc -c conftest.c >&5
configure:3897: $? = 0
configure:3906: result: yes
configure:3915: checking whether gcc accepts -g
configure:3935: gcc -c -g conftest.c >&5
configure:3935: $? = 0
configure:3976: result: yes
configure:3993: checking for gcc option to accept ISO C89
configure:4057: gcc -c -g -O2 conftest.c >&5
configure:4057: $? = 0
configure:4070: result: none needed
configure:4092: checking dependency style of gcc
configure:4203: result: gcc3
configure:4218: checking for a sed that does not truncate output
configure:4282: result: /bin/sed
configure:4300: checking for grep that handles long lines and -e
configure:4358: result: /bin/grep
configure:4363: checking for egrep
configure:4425: result: /bin/grep -E
configure:4430: checking for fgrep
configure:4492: result: /bin/grep -F
configure:4527: checking for ld used by gcc
configure:4594: result: /usr/bin/ld
configure:4601: checking if the linker (/usr/bin/ld) is GNU ld
configure:4616: result: yes
configure:4628: checking for BSD- or MS-compatible name lister (nm)
configure:4677: result: /usr/bin/nm -B
configure:4807: checking the name lister (/usr/bin/nm -B) interface
configure:4814: gcc -c -g -O2 conftest.c >&5
configure:4817: /usr/bin/nm -B "conftest.o"
configure:4820: output
00000000 B some_variable
configure:4827: result: BSD nm
configure:4830: checking whether ln -s works
configure:4834: result: yes
configure:4842: checking the maximum length of command line arguments
configure:4967: result: 1966080
configure:4984: checking whether the shell understands some XSI constructs
configure:4994: result: yes
configure:4998: checking whether the shell understands "+="
configure:5004: result: yes
configure:5039: checking for /usr/bin/ld option to reload object files
configure:5046: result: -r
configure:5115: checking for objdump
configure:5131: found /usr/bin/objdump
configure:5142: result: objdump
configure:5174: checking how to recognize dependent libraries
configure:5376: result: pass_all
configure:5436: checking for ar
configure:5452: found /usr/bin/ar
configure:5463: result: ar
configure:5541: checking for strip
configure:5557: found /usr/bin/strip
configure:5568: result: strip
configure:5640: checking for ranlib
configure:5656: found /usr/bin/ranlib
configure:5667: result: ranlib
configure:5769: checking command to parse /usr/bin/nm -B output from gcc object
configure:5887: gcc -c -g -O2 conftest.c >&5
configure:5890: $? = 0
configure:5894: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
configure:5897: $? = 0
configure:5951: gcc -o conftest -g -O2 conftest.c conftstm.o >&5
configure:5954: $? = 0
configure:5992: result: ok
configure:6833: checking how to run the C preprocessor
configure:6864: gcc -E conftest.c
configure:6864: $? = 0
configure:6878: gcc -E conftest.c
conftest.c:11:28: error: ac_nonexistent.h: No such file or directory
configure:6878: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6903: result: gcc -E
configure:6923: gcc -E conftest.c
configure:6923: $? = 0
configure:6937: gcc -E conftest.c
conftest.c:11:28: error: ac_nonexistent.h: No such file or directory
configure:6937: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6966: checking for ANSI C header files
configure:6986: gcc -c -g -O2 conftest.c >&5
configure:6986: $? = 0
configure:7059: gcc -o conftest -g -O2 conftest.c >&5
configure:7059: $? = 0
configure:7059: ./conftest
configure:7059: $? = 0
configure:7070: result: yes
configure:7083: checking for sys/types.h
configure:7083: gcc -c -g -O2 conftest.c >&5
configure:7083: $? = 0
configure:7083: result: yes
configure:7083: checking for sys/stat.h
configure:7083: gcc -c -g -O2 conftest.c >&5
configure:7083: $? = 0
configure:7083: result: yes
configure:7083: checking for stdlib.h
configure:7083: gcc -c -g -O2 conftest.c >&5
configure:7083: $? = 0
configure:7083: result: yes
configure:7083: checking for string.h
configure:7083: gcc -c -g -O2 conftest.c >&5
configure:7083: $? = 0
configure:7083: result: yes
configure:7083: checking for memory.h
configure:7083: gcc -c -g -O2 conftest.c >&5
configure:7083: $? = 0
configure:7083: result: yes
configure:7083: checking for strings.h
configure:7083: gcc -c -g -O2 conftest.c >&5
configure:7083: $? = 0
configure:7083: result: yes
configure:7083: checking for inttypes.h
configure:7083: gcc -c -g -O2 conftest.c >&5
configure:7083: $? = 0
configure:7083: result: yes
configure:7083: checking for stdint.h
configure:7083: gcc -c -g -O2 conftest.c >&5
configure:7083: $? = 0
configure:7083: result: yes
configure:7083: checking for unistd.h
configure:7083: gcc -c -g -O2 conftest.c >&5
configure:7083: $? = 0
configure:7083: result: yes
configure:7097: checking for dlfcn.h
configure:7097: gcc -c -g -O2 conftest.c >&5
configure:7097: $? = 0
configure:7097: result: yes
configure:7284: checking for objdir
configure:7299: result: .libs
configure:7570: checking if gcc supports -fno-rtti -fno-exceptions
configure:7588: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:7592: $? = 0
configure:7605: result: no
configure:7625: checking for gcc option to produce PIC
configure:7910: result: -fPIC -DPIC
configure:7922: checking if gcc PIC flag -fPIC -DPIC works
configure:7940: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5
configure:7944: $? = 0
configure:7957: result: yes
configure:7981: checking if gcc static flag -static works
configure:8009: result: no
configure:8024: checking if gcc supports -c -o file.o
configure:8045: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5
configure:8049: $? = 0
configure:8071: result: yes
configure:8079: checking if gcc supports -c -o file.o
configure:8126: result: yes
configure:8159: checking whether the gcc linker (/usr/bin/ld) supports shared libraries
configure:9234: result: yes
configure:9271: checking whether -lc should be explicitly linked in
configure:9279: gcc -c -g -O2 conftest.c >&5
configure:9282: $? = 0
configure:9297: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:9300: $? = 0
configure:9314: result: no
configure:9479: checking dynamic linker characteristics
configure:9934: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5
configure:9934: $? = 0
configure:10156: result: GNU/Linux ld.so
configure:10263: checking how to hardcode library paths into programs
configure:10288: result: immediate
configure:10828: checking whether stripping libraries is possible
configure:10833: result: yes
configure:10868: checking if libtool supports shared libraries
configure:10870: result: yes
configure:10873: checking whether to build shared libraries
configure:10894: result: yes
configure:10897: checking whether to build static libraries
configure:10901: result: yes
configure:10981: checking for gcc
configure:11008: result: gcc
configure:11030: checking for gcc option to accept ISO C99
configure:11179: gcc -c -g -O2 conftest.c >&5
conftest.c:73: error: expected ';', ',' or ')' before 'text'
conftest.c: In function 'main':
conftest.c:127: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar'
conftest.c:127: error: 'newvar' undeclared (first use in this function)
conftest.c:127: error: (Each undeclared identifier is reported only once
conftest.c:127: error: for each function it appears in.)
conftest.c:137: error: 'for' loop initial declarations are only allowed in C99 mode
conftest.c:137: note: use option -std=c99 or -std=gnu99 to compile your code
configure:11179: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <stdarg.h>
| #include <stdbool.h>
| #include <stdlib.h>
| #include <wchar.h>
| #include <stdio.h>
|
| // Check varargs macros. These examples are taken from C99 6.10.3.5.
| #define debug(...) fprintf (stderr, __VA_ARGS__)
| #define showlist(...) puts (#__VA_ARGS__)
| #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__))
| static void
| test_varargs_macros (void)
| {
| int x = 1234;
| int y = 5678;
| debug ("Flag");
| debug ("X = %d\n", x);
| showlist (The first, second, and third items.);
| report (x>y, "x is %d but y is %d", x, y);
| }
|
| // Check long long types.
| #define BIG64 18446744073709551615ull
| #define BIG32 4294967295ul
| #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0)
| #if !BIG_OK
| your preprocessor is broken;
| #endif
| #if BIG_OK
| #else
| your preprocessor is broken;
| #endif
| static long long int bignum = -9223372036854775807LL;
| static unsigned long long int ubignum = BIG64;
|
| struct incomplete_array
| {
| int datasize;
| double data[];
| };
|
| struct named_init {
| int number;
| const wchar_t *name;
| double average;
| };
|
| typedef const char *ccp;
|
| static inline int
| test_restrict (ccp restrict text)
| {
| // See if C++-style comments work.
| // Iterate through items via the restricted pointer.
| // Also check for declarations in for loops.
| for (unsigned int i = 0; *(text+i) != '\0'; ++i)
| continue;
| return 0;
| }
|
| // Check varargs and va_copy.
| static void
| test_varargs (const char *format, ...)
| {
| va_list args;
| va_start (args, format);
| va_list args_copy;
| va_copy (args_copy, args);
|
| const char *str;
| int number;
| float fnumber;
|
| while (*format)
| {
| switch (*format++)
| {
| case 's': // string
| str = va_arg (args_copy, const char *);
| break;
| case 'd': // int
| number = va_arg (args_copy, int);
| break;
| case 'f': // float
| fnumber = va_arg (args_copy, double);
| break;
| default:
| break;
| }
| }
| va_end (args_copy);
| va_end (args);
| }
|
| int
| main ()
| {
|
| // Check bool.
| _Bool success = false;
|
| // Check restrict.
| if (test_restrict ("String literal") == 0)
| success = true;
| char *restrict newvar = "Another string";
|
| // Check varargs.
| test_varargs ("s, d' f .", "string", 65, 34.234);
| test_varargs_macros ();
|
| // Check flexible array members.
| struct incomplete_array *ia =
| malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10));
| ia->datasize = 10;
| for (int i = 0; i < ia->datasize; ++i)
| ia->data[i] = i * 1.234;
|
| // Check named initializers.
| struct named_init ni = {
| .number = 34,
| .name = L"Test wide string",
| .average = 543.34343,
| };
|
| ni.number = 58;
|
| int dynamic_array[ni.number];
| dynamic_array[ni.number - 1] = 543;
|
| // work around unused variable warnings
| return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x'
| || dynamic_array[ni.number - 1] != 543);
|
| ;
| return 0;
| }
configure:11179: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:11179: $? = 0
configure:11199: result: -std=gnu99
configure:11208: checking whether gcc -std=gnu99 and cc understand -c and -o together
configure:11239: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5
configure:11243: $? = 0
configure:11249: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5
configure:11253: $? = 0
configure:11264: cc -c conftest.c >&5
configure:11268: $? = 0
configure:11276: cc -c conftest.c -o conftest2.o >&5
configure:11280: $? = 0
configure:11286: cc -c conftest.c -o conftest2.o >&5
configure:11290: $? = 0
configure:11308: result: yes
configure:11377: checking for ar
configure:11404: result: ar
configure:11561: checking for ld
configure:11588: result: /usr/bin/ld
configure:11653: checking for nm
configure:11680: result: /usr/bin/nm -B
configure:11745: checking for ar
configure:11772: result: ar
configure:11837: checking for as
configure:11853: found /usr/bin/as
configure:11864: result: as
configure:11929: checking for dlltool
configure:11959: result: no
configure:12021: checking for objdump
configure:12048: result: objdump
configure:12113: checking for strip
configure:12140: result: strip
configure:12205: checking for ranlib
configure:12232: result: ranlib
configure:12313: checking for g++
configure:12329: found /usr/bin/g++
configure:12340: result: g++
configure:12367: checking for C++ compiler version
configure:12376: g++ --version >&5
g++ (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12387: $? = 0
configure:12376: g++ -v >&5
Using built-in specs.
Target: i686-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch=i686 --build=i686-redhat-linux
Thread model: posix
gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC)
configure:12387: $? = 0
configure:12376: g++ -V >&5
g++: '-V' option must have argument
configure:12387: $? = 1
configure:12376: g++ -qversion >&5
g++: unrecognized option '-qversion'
g++: no input files
configure:12387: $? = 1
configure:12391: checking whether we are using the GNU C++ compiler
configure:12410: g++ -c conftest.cpp >&5
configure:12410: $? = 0
configure:12419: result: yes
configure:12428: checking whether g++ accepts -g
configure:12448: g++ -c -g conftest.cpp >&5
configure:12448: $? = 0
configure:12489: result: yes
configure:12514: checking dependency style of g++
configure:12625: result: gcc3
configure:12648: checking how to run the C++ preprocessor
configure:12675: g++ -E conftest.cpp
configure:12675: $? = 0
configure:12689: g++ -E conftest.cpp
conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory
configure:12689: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12714: result: g++ -E
configure:12734: g++ -E conftest.cpp
configure:12734: $? = 0
configure:12748: g++ -E conftest.cpp
conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory
configure:12748: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12916: checking for ld used by g++
configure:12983: result: /usr/bin/ld
configure:12990: checking if the linker (/usr/bin/ld) is GNU ld
configure:13005: result: yes
configure:13060: checking whether the g++ linker (/usr/bin/ld) supports shared libraries
configure:13992: result: yes
configure:14020: g++ -c -g -O2 conftest.cpp >&5
configure:14023: $? = 0
configure:14205: checking for g++ option to produce PIC
configure:14527: result: -fPIC -DPIC
configure:14536: checking if g++ PIC flag -fPIC -DPIC works
configure:14554: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5
configure:14558: $? = 0
configure:14571: result: yes
configure:14592: checking if g++ static flag -static works
configure:14620: result: no
configure:14632: checking if g++ supports -c -o file.o
configure:14653: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:14657: $? = 0
configure:14679: result: yes
configure:14684: checking if g++ supports -c -o file.o
configure:14731: result: yes
configure:14761: checking whether the g++ linker (/usr/bin/ld) supports shared libraries
configure:14789: result: yes
configure:14932: checking dynamic linker characteristics
configure:15543: result: GNU/Linux ld.so
configure:15596: checking how to hardcode library paths into programs
configure:15621: result: immediate
configure:15672: checking for special C compiler options needed for large files
configure:15717: result: no
configure:15723: checking for _FILE_OFFSET_BITS value needed for large files
configure:15748: gcc -std=gnu99 -c -g -O2 conftest.c >&5
conftest.c:29: warning: left shift count >= width of type
conftest.c:29: warning: left shift count >= width of type
conftest.c:31: error: size of array 'off_t_is_large' is negative
configure:15748: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <sys/types.h>
| /* Check that off_t can represent 2**63 - 1 correctly.
| We can't simply define LARGE_OFF_T to be 9223372036854775807,
| since some C++ compilers masquerading as C compilers
| incorrectly reject 9223372036854775807. */
| #define LARGE_OFF_T (((off_t) 1 << 62) - 1 + ((off_t) 1 << 62))
| int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721
| && LARGE_OFF_T % 2147483647 == 1)
| ? 1 : -1];
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:15772: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:15772: $? = 0
configure:15780: result: 64
configure:15871: checking for stdlib.h
configure:15871: result: yes
configure:15871: checking for unistd.h
configure:15871: result: yes
configure:15871: checking for sys/param.h
configure:15871: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:15871: $? = 0
configure:15871: result: yes
configure:15891: checking for getpagesize
configure:15891: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:15891: $? = 0
configure:15891: result: yes
configure:15900: checking for working mmap
configure:16047: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:16047: $? = 0
configure:16047: ./conftest
configure:16047: $? = 0
configure:16057: result: yes
configure:16068: checking for malloc in -lmalloc
configure:16093: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lmalloc >&5
conftest.c:36: warning: conflicting types for built-in function 'malloc'
/usr/bin/ld: cannot find -lmalloc
collect2: ld returned 1 exit status
configure:16093: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char malloc ();
| int
| main ()
| {
| return malloc ();
| ;
| return 0;
| }
configure:16102: result: no
configure:16115: checking for struct stat.st_blksize
configure:16115: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16115: $? = 0
configure:16115: result: yes
configure:16129: checking sys/resource.h usability
configure:16129: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16129: $? = 0
configure:16129: result: yes
configure:16129: checking sys/resource.h presence
configure:16129: gcc -E conftest.c
configure:16129: $? = 0
configure:16129: result: yes
configure:16129: checking for sys/resource.h
configure:16129: result: yes
configure:16141: checking sys/times.h usability
configure:16141: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16141: $? = 0
configure:16141: result: yes
configure:16141: checking sys/times.h presence
configure:16141: gcc -E conftest.c
configure:16141: $? = 0
configure:16141: result: yes
configure:16141: checking for sys/times.h
configure:16141: result: yes
configure:16153: checking malloc.h usability
configure:16153: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16153: $? = 0
configure:16153: result: yes
configure:16153: checking malloc.h presence
configure:16153: gcc -E conftest.c
configure:16153: $? = 0
configure:16153: result: yes
configure:16153: checking for malloc.h
configure:16153: result: yes
configure:16165: checking glob.h usability
configure:16165: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16165: $? = 0
configure:16165: result: yes
configure:16165: checking glob.h presence
configure:16165: gcc -E conftest.c
configure:16165: $? = 0
configure:16165: result: yes
configure:16165: checking for glob.h
configure:16165: result: yes
configure:16179: checking for mallinfo
configure:16179: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:16179: $? = 0
configure:16179: result: yes
configure:16190: checking whether isnan is declared
configure:16190: gcc -std=gnu99 -c -g -O2 conftest.c >&5
configure:16190: $? = 0
configure:16190: result: yes
configure:16205: checking for getrlimit
configure:16205: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:16205: $? = 0
configure:16205: result: yes
configure:16216: checking for gethostname
configure:16216: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5
configure:16216: $? = 0
configure:16216: result: yes
configure:16283: checking for floor in -lm
configure:16308: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5
conftest.c:49: warning: conflicting types for built-in function 'floor'
configure:16308: $? = 0
configure:16317: result: yes
configure:16330: checking for DATA support
configure:16347: result: yes
configure:16740: checking pthread.h usability
configure:16740: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5
configure:16740: $? = 0
configure:16740: result: yes
configure:16740: checking pthread.h presence
configure:16740: gcc -E -I/usr/local/include conftest.c
configure:16740: $? = 0
configure:16740: result: yes
configure:16740: checking for pthread.h
configure:16740: result: yes
configure:16750: checking for pthread_create in -lpthread
configure:16775: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib conftest.c -lpthread -lm >&5
configure:16775: $? = 0
configure:16784: result: yes
configure:16893: checking zlib.h usability
configure:16893: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local/include conftest.c >&5
configure:16893: $? = 0
configure:16893: result: yes
configure:16893: checking zlib.h presence
configure:16893: gcc -E -I/usr/local//include -I/usr/local/include conftest.c
configure:16893: $? = 0
configure:16893: result: yes
configure:16893: checking for zlib.h
configure:16893: result: yes
configure:16903: checking for library containing deflate
configure:16934: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local/lib conftest.c -lpthread -lm >&5
/tmp/ccNcXz1a.o: In function `main':
/home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:58: undefined reference to `deflate'
collect2: ld returned 1 exit status
configure:16934: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
| ;
| return 0;
| }
configure:16934: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local/lib conftest.c -lz -lpthread -lm >&5
configure:16934: $? = 0
configure:16951: result: -lz
configure:17137: checking szlib.h usability
configure:17137: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c >&5
configure:17137: $? = 0
configure:17137: result: yes
configure:17137: checking szlib.h presence
configure:17137: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c
configure:17137: $? = 0
configure:17137: result: yes
configure:17137: checking for szlib.h
configure:17137: result: yes
configure:17147: checking for library containing SZ_BufftoBuffCompress
configure:17178: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lz -lpthread -lm >&5
/tmp/ccK6II0n.o: In function `main':
/home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:60: undefined reference to `SZ_BufftoBuffCompress'
collect2: ld returned 1 exit status
configure:17178: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char SZ_BufftoBuffCompress ();
| int
| main ()
| {
| return SZ_BufftoBuffCompress ();
| ;
| return 0;
| }
configure:17178: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lsz -lz -lpthread -lm >&5
configure:17178: $? = 0
configure:17195: result: -lsz
configure:17385: checking hdf5.h usability
configure:17385: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c >&5
configure:17385: $? = 0
configure:17385: result: yes
configure:17385: checking hdf5.h presence
configure:17385: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c
configure:17385: $? = 0
configure:17385: result: yes
configure:17385: checking for hdf5.h
configure:17385: result: yes
configure:17395: checking for library containing H5Fopen
configure:17426: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lsz -lz -lpthread -lm >&5
/tmp/ccTGgCex.o: In function `main':
/home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:62: undefined reference to `H5Fopen'
collect2: ld returned 1 exit status
configure:17426: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fopen ();
| int
| main ()
| {
| return H5Fopen ();
| ;
| return 0;
| }
configure:17426: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm >&5
configure:17426: $? = 0
configure:17443: result: -lhdf5
configure:17455: checking for library containing H5DSis_scale
configure:17486: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/ccinS5Ix.o: In function `main':
/home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:63: undefined reference to `H5DSis_scale'
collect2: ld returned 1 exit status
configure:17486: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5DSis_scale ();
| int
| main ()
| {
| return H5DSis_scale ();
| ;
| return 0;
| }
configure:17486: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:17486: $? = 0
configure:17503: result: -lhdf5_hl
configure:17704: checking netcdf.h usability
configure:17704: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c >&5
configure:17704: $? = 0
configure:17704: result: yes
configure:17704: checking netcdf.h presence
configure:17704: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c
configure:17704: $? = 0
configure:17704: result: yes
configure:17704: checking for netcdf.h
configure:17704: result: yes
configure:17714: checking for library containing nc_open
configure:17745: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/cczNCyWJ.o: In function `main':
/home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:64: undefined reference to `nc_open'
collect2: ld returned 1 exit status
configure:17745: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char nc_open ();
| int
| main ()
| {
| return nc_open ();
| ;
| return 0;
| }
configure:17745: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:17745: $? = 0
configure:17762: result: -lnetcdf
configure:17777: checking nc-config script
configure:17781: checking for nc-config
configure:17797: found /usr/local//bin/nc-config
configure:17808: result: /usr/local//bin/nc-config
configure:17817: checking netcdf's OpenDAP support
configure:17826: result: no
configure:17829: checking netcdf's nc2 support
configure:17835: result: yes
configure:17841: checking netcdf's nc4 support
configure:17847: result: yes
configure:17966: checking for library containing jas_stream_memopen
configure:17997: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/ccW7RSWQ.o: In function `main':
/home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:67: undefined reference to `jas_stream_memopen'
collect2: ld returned 1 exit status
configure:17997: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char jas_stream_memopen ();
| int
| main ()
| {
| return jas_stream_memopen ();
| ;
| return 0;
| }
configure:17997: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:17997: $? = 0
configure:18014: result: -ljasper
configure:18134: checking grib_api.h usability
configure:18134: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c >&5
configure:18134: $? = 0
configure:18134: result: yes
configure:18134: checking grib_api.h presence
configure:18134: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c
configure:18134: $? = 0
configure:18134: result: yes
configure:18134: checking for grib_api.h
configure:18134: result: yes
configure:18144: checking for library containing grib_get_message
configure:18175: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/ccR4oDf7.o: In function `main':
/home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:69: undefined reference to `grib_get_message'
collect2: ld returned 1 exit status
configure:18175: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char grib_get_message ();
| int
| main ()
| {
| return grib_get_message ();
| ;
| return 0;
| }
configure:18175: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:18175: $? = 0
configure:18192: result: -lgrib_api
configure:18223: checking for GRIB support
configure:18240: result: yes
configure:18246: checking for CGRIBEX support
configure:18263: result: yes
configure:18269: checking for SERVICE support
configure:18286: result: yes
configure:18292: checking for EXTRA support
configure:18309: result: yes
configure:18315: checking for IEG support
configure:18332: result: yes
configure:18431: checking proj_api.h usability
configure:18431: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c >&5
configure:18431: $? = 0
configure:18431: result: yes
configure:18431: checking proj_api.h presence
configure:18431: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c
configure:18431: $? = 0
configure:18431: result: yes
configure:18431: checking for proj_api.h
configure:18431: result: yes
configure:18441: checking for library containing pj_init
configure:18472: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/ccticwNi.o: In function `main':
/home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:76: undefined reference to `pj_init'
collect2: ld returned 1 exit status
configure:18472: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char pj_init ();
| int
| main ()
| {
| return pj_init ();
| ;
| return 0;
| }
configure:18472: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:18472: $? = 0
configure:18489: result: -lproj
configure:18613: checking udunits2.h usability
configure:18613: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include conftest.c >&5
configure:18613: $? = 0
configure:18613: result: yes
configure:18613: checking udunits2.h presence
configure:18613: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include conftest.c
configure:18613: $? = 0
configure:18613: result: yes
configure:18613: checking for udunits2.h
configure:18613: result: yes
configure:18623: checking for library containing ut_parse
configure:18654: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib -L/usr/local//lib conftest.c -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/ccxUvinB.o: In function `main':
/home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:78: undefined reference to `ut_parse'
collect2: ld returned 1 exit status
configure:18654: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| #define HAVE_LIBPROJ 1
| #define HAVE_UDUNITS2_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char ut_parse ();
| int
| main ()
| {
| return ut_parse ();
| ;
| return 0;
| }
configure:18654: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib -L/usr/local//lib conftest.c -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
configure:18654: $? = 0
configure:18671: result: -ludunits2
configure:18796: checking magics_api.h usability
configure:18796: gcc -std=gnu99 -c -g -O2 -I/usr/local//include/magics -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include conftest.c >&5
configure:18796: $? = 0
configure:18796: result: yes
configure:18796: checking magics_api.h presence
configure:18796: gcc -E -I/usr/local//include/magics -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include conftest.c
configure:18796: $? = 0
configure:18796: result: yes
configure:18796: checking for magics_api.h
configure:18796: result: yes
configure:18806: checking for library containing mag_open
configure:18837: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include/magics -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib -L/usr/local//lib conftest.c -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/tmp/ccnZqtbF.o: In function `main':
/home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:80: undefined reference to `mag_open'
collect2: ld returned 1 exit status
configure:18837: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| #define HAVE_LIBPROJ 1
| #define HAVE_UDUNITS2_H 1
| #define HAVE_LIBUDUNITS2 1
| #define HAVE_MAGICS_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char mag_open ();
| int
| main ()
| {
| return mag_open ();
| ;
| return 0;
| }
configure:18837: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include/magics -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib -L/usr/local//lib conftest.c -lMagPlus -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostringstream<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::~basic_ostringstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<wchar_t, std::char_traits<wchar_t> >& std::operator>><wchar_t, std::char_traits<wchar_t> >(std::basic_istream<wchar_t, std::char_traits<wchar_t> >&, wchar_t&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >& std::operator>><char, std::char_traits<char> >(std::basic_istream<char, std::char_traits<char> >&, char&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios<char, std::char_traits<char> >::widen(char) const'
/usr/local//lib/libMagPlus.so: undefined reference to `virtual thunk to std::basic_ostream<char, std::char_traits<char> >::~basic_ostream()'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_streambuf<char, std::char_traits<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::push_back(char)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<void const*>(void const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::runtime_error::runtime_error(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ofstream<char, std::char_traits<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >& std::operator>><char, std::char_traits<char> >(std::basic_istream<char, std::char_traits<char> >&, char*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_pure_virtual'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >::operator<<(short)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::swap(std::basic_string<char, std::char_traits<char>, std::allocator<char> >&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_streambuf<char, std::char_traits<char> >::~basic_streambuf()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >::~basic_ostream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_Rep::_M_destroy(std::allocator<wchar_t> const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ifstream<char, std::char_traits<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >& std::basic_istream<char, std::char_traits<char> >::_M_extract<double>(double&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::locale::~locale()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ifstream<char, std::char_traits<char> >::~basic_ifstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `typeinfo for std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::locale::locale(std::locale const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::exception'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >::get(std::basic_streambuf<char, std::char_traits<char> >&, char)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >::seekp(std::fpos<__mbstate_t>)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<wchar_t, std::char_traits<wchar_t> >& std::basic_ostream<wchar_t, std::char_traits<wchar_t> >::_M_insert<long long>(long long)'
/usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_istringstream<char, std::char_traits<char>, std::allocator<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_stringbuf<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios<char, std::char_traits<char> >::imbue(std::locale const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::rfind(char, unsigned int) const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::~basic_filebuf()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::__throw_bad_cast()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::_List_node_base::unhook()'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_mutate(unsigned int, unsigned int, unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::basic_string(std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> > const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_rethrow'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >::flush()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::substr(unsigned int, unsigned int) const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >::get(char&)'
/usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_ostringstream<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios<char, std::char_traits<char> >::basic_ios()'
/usr/local//lib/libMagPlus.so: undefined reference to `__gxx_personality_v0'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::_Rep::_S_create(unsigned int, unsigned int, std::allocator<char> const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >::operator<<(float)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >& std::operator>><char, std::char_traits<char>, std::allocator<char> >(std::basic_istream<char, std::char_traits<char> >&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_first_of(char const*, unsigned int, unsigned int) const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::assign(std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> > const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::replace(unsigned int, unsigned int, wchar_t const*, unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::cerr'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()'
/usr/local//lib/libMagPlus.so: undefined reference to `operator delete[](void*)'
/usr/local//lib/libMagPlus.so: undefined reference to `operator new[](unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_filebuf<char, std::char_traits<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace_aux(unsigned int, unsigned int, unsigned int, char)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
/usr/local//lib/libMagPlus.so: undefined reference to `virtual thunk to std::basic_ostream<char, std::char_traits<char> >::~basic_ostream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::ios_base::Init::Init()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >& std::ws<char, std::char_traits<char> >(std::basic_istream<char, std::char_traits<char> >&)'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_istringstream<char, std::char_traits<char>, std::allocator<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_M_leak_hard()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ifstream<char, std::char_traits<char> >::basic_ifstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::__throw_bad_alloc()'
/usr/local//lib/libMagPlus.so: undefined reference to `virtual thunk to std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::swap(std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::basic_string(unsigned int, wchar_t, std::allocator<wchar_t> const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::_M_sync(char*, unsigned int, unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ostringstream<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::__throw_out_of_range(char const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for __cxxabiv1::__pointer_type_info'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_stringbuf<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::str() const'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ios<wchar_t, std::char_traits<wchar_t> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::push_back(wchar_t)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::rfind(char const*, unsigned int, unsigned int) const'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_throw'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `operator delete(void*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::_List_node_base::transfer(std::_List_node_base*, std::_List_node_base*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >::read(char*, int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::runtime_error::~runtime_error()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_last_not_of(char const*, unsigned int, unsigned int) const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<wchar_t, std::char_traits<wchar_t> >& std::operator<< <wchar_t, std::char_traits<wchar_t> >(std::basic_ostream<wchar_t, std::char_traits<wchar_t> >&, char const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::_Rep::_M_destroy(std::allocator<char> const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios<char, std::char_traits<char> >::~basic_ios()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >::getline(char*, int, char)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::time_put<char, std::ostreambuf_iterator<char, std::char_traits<char> > > const& std::use_facet<std::time_put<char, std::ostreambuf_iterator<char, std::char_traits<char> > > >(std::locale const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `operator new(unsigned int, std::nothrow_t const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::erase(__gnu_cxx::__normal_iterator<char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, __gnu_cxx::__normal_iterator<char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >)'
/usr/local//lib/libMagPlus.so: undefined reference to `operator delete(void*, std::nothrow_t const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_decrement(std::_Rb_tree_node_base const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::open(char const*, std::_Ios_Openmode)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::reserve(unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::locale::locale(char const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::basic_filebuf()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*, unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::clear()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(unsigned int, char, std::allocator<char> const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::terminate()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<long long>(long long)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::exception::~exception()'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_free_exception'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::replace(unsigned int, unsigned int, char const*, unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<wchar_t, std::char_traits<wchar_t> >& std::__ostream_insert<wchar_t, std::char_traits<wchar_t> >(std::basic_ostream<wchar_t, std::char_traits<wchar_t> >&, wchar_t const*, int)'
/usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_ofstream<char, std::char_traits<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_ifstream<char, std::char_traits<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::find(char, unsigned int) const'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_get_exception_ptr'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >::seekg(long long, std::_Ios_Seekdir)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_rebalance_for_erase(std::_Rb_tree_node_base*, std::_Rb_tree_node_base&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<wchar_t, std::char_traits<wchar_t> >& std::basic_ostream<wchar_t, std::char_traits<wchar_t> >::_M_insert<unsigned long long>(unsigned long long)'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_streambuf<wchar_t, std::char_traits<wchar_t> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ifstream<char, std::char_traits<char> >::close()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::copy(char*, unsigned int, unsigned int) const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios<wchar_t, std::char_traits<wchar_t> >::~basic_ios()'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_guard_abort'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)'
/usr/local//lib/libMagPlus.so: undefined reference to `virtual thunk to std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_Rep::_S_empty_rep_storage'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<double>(double)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<wchar_t, std::char_traits<wchar_t> >& std::operator<< <wchar_t, std::char_traits<wchar_t> >(std::basic_ostream<wchar_t, std::char_traits<wchar_t> >&, char)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::ios_base::ios_base()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, unsigned int, std::allocator<char> const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ofstream<char, std::char_traits<char> >::~basic_ofstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_last_of(char const*, unsigned int, unsigned int) const'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for __cxxabiv1::__class_type_info'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_leak_hard()'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_guard_acquire'
/usr/local//lib/libMagPlus.so: undefined reference to `std::__basic_file<char>::~__basic_file()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::reserve(unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::time_put<char, std::ostreambuf_iterator<char, std::char_traits<char> > >::put(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, tm const*, char const*, char const*) const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*, unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::ios_base::Init::~Init()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<long>(long)'
/usr/local//lib/libMagPlus.so: undefined reference to `operator new(unsigned int)'
/usr/local//lib/libMagPlus.so: undefined reference to `typeinfo for std::exception'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::append(std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> > const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::cout'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<unsigned long long>(unsigned long long)'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_begin_catch'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<wchar_t, std::char_traits<wchar_t> >& std::basic_ostream<wchar_t, std::char_traits<wchar_t> >::_M_insert<double>(double)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_iostream<char, std::char_traits<char> >::~basic_iostream()'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for __cxxabiv1::__si_class_type_info'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >::tellg()'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ios<char, std::char_traits<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_insert_and_rebalance(bool, std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, std::_Rb_tree_node_base&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >::put(char)'
/usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_end_catch'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_call_unexpected'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::compare(std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> > const&) const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::_Rep::_S_create(unsigned int, unsigned int, std::allocator<wchar_t> const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_guard_release'
/usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_fstream<char, std::char_traits<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::locale::operator=(std::locale const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::_List_node_base::hook(std::_List_node_base*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_streambuf<wchar_t, std::char_traits<wchar_t> >::~basic_streambuf()'
/usr/local//lib/libMagPlus.so: undefined reference to `typeinfo for std::basic_ostream<char, std::char_traits<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `__cxa_allocate_exception'
/usr/local//lib/libMagPlus.so: undefined reference to `std::ios_base::~ios_base()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >& std::basic_istream<char, std::char_traits<char> >::_M_extract<float>(float&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >::operator>>(int&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >& std::getline<char, std::char_traits<char>, std::allocator<char> >(std::basic_istream<char, std::char_traits<char> >&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >&, char)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_first_not_of(char const*, unsigned int, unsigned int) const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <char, std::char_traits<char>, std::allocator<char> >(std::basic_ostream<char, std::char_traits<char> >&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_decrement(std::_Rb_tree_node_base*)'
/usr/local//lib/libMagPlus.so: undefined reference to `typeinfo for std::runtime_error'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >::operator<<(int)'
/usr/local//lib/libMagPlus.so: undefined reference to `__dynamic_cast'
/usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for __cxxabiv1::__vmi_class_type_info'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::__throw_length_error(char const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(unsigned int, char)'
/usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_fstream<char, std::char_traits<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::runtime_error::what() const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >::~basic_ostream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios<char, std::char_traits<char> >::clear(std::_Ios_Iostate)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::_List_node_base::swap(std::_List_node_base&, std::_List_node_base&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_fstream<char, std::char_traits<char> >::~basic_fstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios<char, std::char_traits<char> >::setstate(std::_Ios_Iostate)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_stringstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, std::allocator<char> const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::locale::classic()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::close()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::nothrow'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::runtime_error'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_istringstream()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::find(char const*, unsigned int, unsigned int) const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::exception::what() const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::__throw_logic_error(char const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >::write(char const*, int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::exception::~exception()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<unsigned long>(unsigned long)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<bool>(bool)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >::ignore(int, int)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::locale::locale()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<wchar_t, std::char_traits<wchar_t>, std::allocator<wchar_t> >::~basic_string()'
/usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ofstream<char, std::char_traits<char> >::close()'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios<wchar_t, std::char_traits<wchar_t> >::init(std::basic_streambuf<wchar_t, std::char_traits<wchar_t> >*)'
/usr/local//lib/libMagPlus.so: undefined reference to `std::__basic_file<char>::is_open() const'
/usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::_Rep::_S_empty_rep_storage'
collect2: ld returned 1 exit status
configure:18837: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cdo"
| #define PACKAGE_TARNAME "cdo"
| #define PACKAGE_VERSION "1.6.0rc4"
| #define PACKAGE_STRING "cdo 1.6.0rc4"
| #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
| #define PACKAGE_URL ""
| #define PACKAGE "cdo"
| #define VERSION "1.6.0rc4"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define _FILE_OFFSET_BITS 64
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_SYS_TIMES_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_GLOB_H 1
| #define HAVE_MALLINFO 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETHOSTNAME 1
| #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
| #define USER_NAME "kostas"
| #define HOST_NAME "diogenis.hydromech.tuc.gr"
| #define SYSTEM_TYPE "i686-pc-linux-gnu"
| #define HAVE_LIBM 1
| #define ENABLE_DATA 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_ZLIB_H 1
| #define HAVE_LIBZ 1
| #define HAVE_SZLIB_H 1
| #define HAVE_LIBSZ 1
| #define HAVE_HDF5_H 1
| #define HAVE_LIBHDF5 1
| #define HAVE_NETCDF_H 1
| #define HAVE_LIBNETCDF 1
| #define HAVE_NETCDF2 1
| #define HAVE_NETCDF4 1
| #define HAVE_LIBJASPER 1
| #define HAVE_GRIB_API_H 1
| #define HAVE_LIBGRIB_API 1
| #define HAVE_LIBGRIB 1
| #define HAVE_LIBCGRIBEX 1
| #define HAVE_LIBSERVICE 1
| #define HAVE_LIBEXTRA 1
| #define HAVE_LIBIEG 1
| #define HAVE_PROJ_API_H 1
| #define HAVE_LIBPROJ 1
| #define HAVE_UDUNITS2_H 1
| #define HAVE_LIBUDUNITS2 1
| #define HAVE_MAGICS_API_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char mag_open ();
| int
| main ()
| {
| return mag_open ();
| ;
| return 0;
| }
configure:18854: result: no
configure:18863: error: Could not link to magics library

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=i686-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_gethostname=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_mallinfo=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_have_decl_isnan=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_glob_h=yes
ac_cv_header_grib_api_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_magics_api_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_netcdf_h=yes
ac_cv_header_proj_api_h=yes
ac_cv_header_pthread_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_times_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_szlib_h=yes
ac_cv_header_udunits2_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=i686-pc-linux-gnu
ac_cv_lib_m_floor=yes
ac_cv_lib_malloc_malloc=no
ac_cv_lib_pthread_pthread_create=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_NC_CONFIG=/usr/local//bin/nc-config
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_AS=as
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_LD=/usr/bin/ld
ac_cv_prog_ac_ct_NM='/usr/bin/nm -B'
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_c99=-std=gnu99
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_gcc_c_o=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5DSis_scale=-lhdf5_hl
ac_cv_search_H5Fopen=-lhdf5
ac_cv_search_SZ_BufftoBuffCompress=-lsz
ac_cv_search_deflate=-lz
ac_cv_search_grib_get_message=-lgrib_api
ac_cv_search_jas_stream_memopen=-ljasper
ac_cv_search_mag_open=no
ac_cv_search_nc_open=-lnetcdf
ac_cv_search_pj_init=-lproj
ac_cv_search_ut_parse=-ludunits2
ac_cv_sys_file_offset_bits=64
ac_cv_sys_largefile_CC=no
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=no
lt_cv_prog_compiler_static_works_CXX=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1966080

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/missing --run aclocal-1.11'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AR='ar'
AS='as'
AUTOCONF='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/missing --run autoconf'
AUTOHEADER='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/missing --run autoheader'
AUTOMAKE='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/missing --run automake-1.11'
AWK='gawk'
CC='gcc -std=gnu99'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2'
CLDFLAGS=''
CLIBS=''
CPP='gcc -E'
CPPFLAGS='-I/usr/local//include/magics -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include'
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL=':'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_ALL_STATIC_FALSE=''
ENABLE_ALL_STATIC_TRUE=''
ENABLE_CDI_LIB=''
ENABLE_CDI_LIB_FALSE=''
ENABLE_CDI_LIB_TRUE=''
ENABLE_CGRIBEX='yes'
ENABLE_DATA='yes'
ENABLE_EXTRA='yes'
ENABLE_GRIB='yes'
ENABLE_IEG='yes'
ENABLE_MAGICS_FALSE=''
ENABLE_MAGICS_TRUE=''
ENABLE_SERVICE='yes'
EXEEXT=''
FCFLAGS=''
FGREP='/bin/grep -F'
GREP='/bin/grep'
GRIB_API_INCLUDE=' -I/usr/local//include'
GRIB_API_LIBS=' -L/usr/local//lib -lgrib_api'
HDF5_INCLUDE=' -I/usr/local//include'
HDF5_LIBS=' -L/usr/local//lib -lhdf5'
HDF5_ROOT='/usr/local/'
HOST_NAME='diogenis.hydromech.tuc.gr'
INCLUDES=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
JASPER_LIBS=' -L/usr/local//lib -ljasper'
LD='/usr/bin/ld'
LDFLAGS='-L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib -L/usr/local//lib'
LIBOBJS=''
LIBS='-ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAGICS_INCLUDE=''
MAGICS_LIBS=''
MAGICS_ROOT='/usr/local/'
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/missing --run makeinfo'
MKDIR_P='/bin/mkdir -p'
NC_CONFIG='/usr/local//bin/nc-config'
NETCDF_INCLUDE=' -I/usr/local//include'
NETCDF_LIBS=' -L/usr/local//lib -lnetcdf'
NETCDF_ROOT='/usr/local/'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='cdo'
PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo'
PACKAGE_NAME='cdo'
PACKAGE_STRING='cdo 1.6.0rc4'
PACKAGE_TARNAME='cdo'
PACKAGE_URL=''
PACKAGE_VERSION='1.6.0rc4'
PATH_SEPARATOR=':'
PROJ_INCLUDE=' -I/usr/local//include'
PROJ_LDFLAGS=' -L/usr/local//lib -lproj'
PTHREAD_CC=''
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
SYSTEM_TYPE='i686-pc-linux-gnu'
SZLIB_INCLUDE=' -I/usr/local//include'
SZLIB_LIBS=' -L/usr/local//lib -lsz'
THREADS_INCLUDE=' -I/usr/local/include'
THREADS_LIBS=' -L/usr/local/lib -lpthread'
UDUNITS_INCLUDE=' -I/usr/local//include'
UDUNITS_LDFLAGS=' -L/usr/local//lib -ludunits2'
USER_NAME='kostas'
VERSION='1.6.0rc4'
XML2_LIBS=''
ZLIB_INCLUDE=' -I/usr/local//include'
ZLIB_LIBS=' -L/usr/local//lib -lz'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
ax_pthread_config=''
bindir='${exec_prefix}/bin'
build='i686-pc-linux-gnu'
build_alias=''
build_cpu='i686'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='i686-pc-linux-gnu'
host_alias=''
host_cpu='i686'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cdo"
#define PACKAGE_TARNAME "cdo"
#define PACKAGE_VERSION "1.6.0rc4"
#define PACKAGE_STRING "cdo 1.6.0rc4"
#define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo"
#define PACKAGE_URL ""
#define PACKAGE "cdo"
#define VERSION "1.6.0rc4"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define _FILE_OFFSET_BITS 64
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_SYS_TIMES_H 1
#define HAVE_MALLOC_H 1
#define HAVE_GLOB_H 1
#define HAVE_MALLINFO 1
#define HAVE_DECL_ISNAN 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETHOSTNAME 1
#define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)"
#define USER_NAME "kostas"
#define HOST_NAME "diogenis.hydromech.tuc.gr"
#define SYSTEM_TYPE "i686-pc-linux-gnu"
#define HAVE_LIBM 1
#define ENABLE_DATA 1
#define HAVE_PTHREAD_H 1
#define HAVE_LIBPTHREAD 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define HAVE_SZLIB_H 1
#define HAVE_LIBSZ 1
#define HAVE_HDF5_H 1
#define HAVE_LIBHDF5 1
#define HAVE_NETCDF_H 1
#define HAVE_LIBNETCDF 1
#define HAVE_NETCDF2 1
#define HAVE_NETCDF4 1
#define HAVE_LIBJASPER 1
#define HAVE_GRIB_API_H 1
#define HAVE_LIBGRIB_API 1
#define HAVE_LIBGRIB 1
#define HAVE_LIBCGRIBEX 1
#define HAVE_LIBSERVICE 1
#define HAVE_LIBEXTRA 1
#define HAVE_LIBIEG 1
#define HAVE_PROJ_API_H 1
#define HAVE_LIBPROJ 1
#define HAVE_UDUNITS2_H 1
#define HAVE_LIBUDUNITS2 1
#define HAVE_MAGICS_API_H 1

configure: exit 1
(1-1/2)