This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.6.0rc4, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --with-threads=/usr/local --with-zlib=/usr/local/ --with-szlib=/usr/local/ --with-hdf5=/usr/local/ --with-netcdf=/usr/local/ --with-jasper=/usr/local/ --with-grib_api=/usr/local/ --with-proj=/usr/local/ --with-udunits2=/usr/local/ --with-magics=/usr/local/ --with-libxml2=/usr/ --prefix=/usr/local/ ## --------- ## ## Platform. ## ## --------- ## hostname = diogenis.hydromech.tuc.gr uname -m = i686 uname -r = 2.6.32-279.22.1.el6.i686 uname -s = Linux uname -v = #1 SMP Sun Jan 13 09:20:24 EST 2013 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = i686 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2567: checking build system type configure:2581: result: i686-pc-linux-gnu configure:2601: checking host system type configure:2614: result: i686-pc-linux-gnu configure:2652: checking for a BSD-compatible install configure:2720: result: /usr/bin/install -c configure:2731: checking whether build environment is sane configure:2781: result: yes configure:2922: checking for a thread-safe mkdir -p configure:2961: result: /bin/mkdir -p configure:2974: checking for gawk configure:2990: found /bin/gawk configure:3001: result: gawk configure:3012: checking whether make sets $(MAKE) configure:3034: result: yes configure:3117: checking whether to enable maintainer-specific portions of Makefiles configure:3126: result: no configure:3141: setting up libtool configure:3189: checking how to print strings configure:3216: result: printf configure:3249: checking for style of include used by make configure:3277: result: GNU configure:3348: checking for gcc configure:3364: found /usr/bin/gcc configure:3375: result: gcc configure:3604: checking for C compiler version configure:3613: gcc --version >&5 gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3624: $? = 0 configure:3613: gcc -v >&5 Using built-in specs. Target: i686-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch=i686 --build=i686-redhat-linux Thread model: posix gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC) configure:3624: $? = 0 configure:3613: gcc -V >&5 gcc: '-V' option must have argument configure:3624: $? = 1 configure:3613: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:3624: $? = 1 configure:3644: checking whether the C compiler works configure:3666: gcc conftest.c >&5 configure:3670: $? = 0 configure:3718: result: yes configure:3721: checking for C compiler default output file name configure:3723: result: a.out configure:3729: checking for suffix of executables configure:3736: gcc -o conftest conftest.c >&5 configure:3740: $? = 0 configure:3762: result: configure:3784: checking whether we are cross compiling configure:3792: gcc -o conftest conftest.c >&5 configure:3796: $? = 0 configure:3803: ./conftest configure:3807: $? = 0 configure:3822: result: no configure:3827: checking for suffix of object files configure:3849: gcc -c conftest.c >&5 configure:3853: $? = 0 configure:3874: result: o configure:3878: checking whether we are using the GNU C compiler configure:3897: gcc -c conftest.c >&5 configure:3897: $? = 0 configure:3906: result: yes configure:3915: checking whether gcc accepts -g configure:3935: gcc -c -g conftest.c >&5 configure:3935: $? = 0 configure:3976: result: yes configure:3993: checking for gcc option to accept ISO C89 configure:4057: gcc -c -g -O2 conftest.c >&5 configure:4057: $? = 0 configure:4070: result: none needed configure:4092: checking dependency style of gcc configure:4203: result: gcc3 configure:4218: checking for a sed that does not truncate output configure:4282: result: /bin/sed configure:4300: checking for grep that handles long lines and -e configure:4358: result: /bin/grep configure:4363: checking for egrep configure:4425: result: /bin/grep -E configure:4430: checking for fgrep configure:4492: result: /bin/grep -F configure:4527: checking for ld used by gcc configure:4594: result: /usr/bin/ld configure:4601: checking if the linker (/usr/bin/ld) is GNU ld configure:4616: result: yes configure:4628: checking for BSD- or MS-compatible name lister (nm) configure:4677: result: /usr/bin/nm -B configure:4807: checking the name lister (/usr/bin/nm -B) interface configure:4814: gcc -c -g -O2 conftest.c >&5 configure:4817: /usr/bin/nm -B "conftest.o" configure:4820: output 00000000 B some_variable configure:4827: result: BSD nm configure:4830: checking whether ln -s works configure:4834: result: yes configure:4842: checking the maximum length of command line arguments configure:4967: result: 1966080 configure:4984: checking whether the shell understands some XSI constructs configure:4994: result: yes configure:4998: checking whether the shell understands "+=" configure:5004: result: yes configure:5039: checking for /usr/bin/ld option to reload object files configure:5046: result: -r configure:5115: checking for objdump configure:5131: found /usr/bin/objdump configure:5142: result: objdump configure:5174: checking how to recognize dependent libraries configure:5376: result: pass_all configure:5436: checking for ar configure:5452: found /usr/bin/ar configure:5463: result: ar configure:5541: checking for strip configure:5557: found /usr/bin/strip configure:5568: result: strip configure:5640: checking for ranlib configure:5656: found /usr/bin/ranlib configure:5667: result: ranlib configure:5769: checking command to parse /usr/bin/nm -B output from gcc object configure:5887: gcc -c -g -O2 conftest.c >&5 configure:5890: $? = 0 configure:5894: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:5897: $? = 0 configure:5951: gcc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:5954: $? = 0 configure:5992: result: ok configure:6833: checking how to run the C preprocessor configure:6864: gcc -E conftest.c configure:6864: $? = 0 configure:6878: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:6878: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | /* end confdefs.h. */ | #include configure:6903: result: gcc -E configure:6923: gcc -E conftest.c configure:6923: $? = 0 configure:6937: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:6937: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | /* end confdefs.h. */ | #include configure:6966: checking for ANSI C header files configure:6986: gcc -c -g -O2 conftest.c >&5 configure:6986: $? = 0 configure:7059: gcc -o conftest -g -O2 conftest.c >&5 configure:7059: $? = 0 configure:7059: ./conftest configure:7059: $? = 0 configure:7070: result: yes configure:7083: checking for sys/types.h configure:7083: gcc -c -g -O2 conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for sys/stat.h configure:7083: gcc -c -g -O2 conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for stdlib.h configure:7083: gcc -c -g -O2 conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for string.h configure:7083: gcc -c -g -O2 conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for memory.h configure:7083: gcc -c -g -O2 conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for strings.h configure:7083: gcc -c -g -O2 conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for inttypes.h configure:7083: gcc -c -g -O2 conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for stdint.h configure:7083: gcc -c -g -O2 conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7083: checking for unistd.h configure:7083: gcc -c -g -O2 conftest.c >&5 configure:7083: $? = 0 configure:7083: result: yes configure:7097: checking for dlfcn.h configure:7097: gcc -c -g -O2 conftest.c >&5 configure:7097: $? = 0 configure:7097: result: yes configure:7284: checking for objdir configure:7299: result: .libs configure:7570: checking if gcc supports -fno-rtti -fno-exceptions configure:7588: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:7592: $? = 0 configure:7605: result: no configure:7625: checking for gcc option to produce PIC configure:7910: result: -fPIC -DPIC configure:7922: checking if gcc PIC flag -fPIC -DPIC works configure:7940: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:7944: $? = 0 configure:7957: result: yes configure:7981: checking if gcc static flag -static works configure:8009: result: no configure:8024: checking if gcc supports -c -o file.o configure:8045: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:8049: $? = 0 configure:8071: result: yes configure:8079: checking if gcc supports -c -o file.o configure:8126: result: yes configure:8159: checking whether the gcc linker (/usr/bin/ld) supports shared libraries configure:9234: result: yes configure:9271: checking whether -lc should be explicitly linked in configure:9279: gcc -c -g -O2 conftest.c >&5 configure:9282: $? = 0 configure:9297: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:9300: $? = 0 configure:9314: result: no configure:9479: checking dynamic linker characteristics configure:9934: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:9934: $? = 0 configure:10156: result: GNU/Linux ld.so configure:10263: checking how to hardcode library paths into programs configure:10288: result: immediate configure:10828: checking whether stripping libraries is possible configure:10833: result: yes configure:10868: checking if libtool supports shared libraries configure:10870: result: yes configure:10873: checking whether to build shared libraries configure:10894: result: yes configure:10897: checking whether to build static libraries configure:10901: result: yes configure:10981: checking for gcc configure:11008: result: gcc configure:11030: checking for gcc option to accept ISO C99 configure:11179: gcc -c -g -O2 conftest.c >&5 conftest.c:73: error: expected ';', ',' or ')' before 'text' conftest.c: In function 'main': conftest.c:127: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' conftest.c:127: error: 'newvar' undeclared (first use in this function) conftest.c:127: error: (Each undeclared identifier is reported only once conftest.c:127: error: for each function it appears in.) conftest.c:137: error: 'for' loop initial declarations are only allowed in C99 mode conftest.c:137: note: use option -std=c99 or -std=gnu99 to compile your code configure:11179: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:11179: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:11179: $? = 0 configure:11199: result: -std=gnu99 configure:11208: checking whether gcc -std=gnu99 and cc understand -c and -o together configure:11239: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11243: $? = 0 configure:11249: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11253: $? = 0 configure:11264: cc -c conftest.c >&5 configure:11268: $? = 0 configure:11276: cc -c conftest.c -o conftest2.o >&5 configure:11280: $? = 0 configure:11286: cc -c conftest.c -o conftest2.o >&5 configure:11290: $? = 0 configure:11308: result: yes configure:11377: checking for ar configure:11404: result: ar configure:11561: checking for ld configure:11588: result: /usr/bin/ld configure:11653: checking for nm configure:11680: result: /usr/bin/nm -B configure:11745: checking for ar configure:11772: result: ar configure:11837: checking for as configure:11853: found /usr/bin/as configure:11864: result: as configure:11929: checking for dlltool configure:11959: result: no configure:12021: checking for objdump configure:12048: result: objdump configure:12113: checking for strip configure:12140: result: strip configure:12205: checking for ranlib configure:12232: result: ranlib configure:12313: checking for g++ configure:12329: found /usr/bin/g++ configure:12340: result: g++ configure:12367: checking for C++ compiler version configure:12376: g++ --version >&5 g++ (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:12387: $? = 0 configure:12376: g++ -v >&5 Using built-in specs. Target: i686-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch=i686 --build=i686-redhat-linux Thread model: posix gcc version 4.4.6 20120305 (Red Hat 4.4.6-4) (GCC) configure:12387: $? = 0 configure:12376: g++ -V >&5 g++: '-V' option must have argument configure:12387: $? = 1 configure:12376: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:12387: $? = 1 configure:12391: checking whether we are using the GNU C++ compiler configure:12410: g++ -c conftest.cpp >&5 configure:12410: $? = 0 configure:12419: result: yes configure:12428: checking whether g++ accepts -g configure:12448: g++ -c -g conftest.cpp >&5 configure:12448: $? = 0 configure:12489: result: yes configure:12514: checking dependency style of g++ configure:12625: result: gcc3 configure:12648: checking how to run the C++ preprocessor configure:12675: g++ -E conftest.cpp configure:12675: $? = 0 configure:12689: g++ -E conftest.cpp conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory configure:12689: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12714: result: g++ -E configure:12734: g++ -E conftest.cpp configure:12734: $? = 0 configure:12748: g++ -E conftest.cpp conftest.cpp:23:28: error: ac_nonexistent.h: No such file or directory configure:12748: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12916: checking for ld used by g++ configure:12983: result: /usr/bin/ld configure:12990: checking if the linker (/usr/bin/ld) is GNU ld configure:13005: result: yes configure:13060: checking whether the g++ linker (/usr/bin/ld) supports shared libraries configure:13992: result: yes configure:14020: g++ -c -g -O2 conftest.cpp >&5 configure:14023: $? = 0 configure:14205: checking for g++ option to produce PIC configure:14527: result: -fPIC -DPIC configure:14536: checking if g++ PIC flag -fPIC -DPIC works configure:14554: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:14558: $? = 0 configure:14571: result: yes configure:14592: checking if g++ static flag -static works configure:14620: result: no configure:14632: checking if g++ supports -c -o file.o configure:14653: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:14657: $? = 0 configure:14679: result: yes configure:14684: checking if g++ supports -c -o file.o configure:14731: result: yes configure:14761: checking whether the g++ linker (/usr/bin/ld) supports shared libraries configure:14789: result: yes configure:14932: checking dynamic linker characteristics configure:15543: result: GNU/Linux ld.so configure:15596: checking how to hardcode library paths into programs configure:15621: result: immediate configure:15672: checking for special C compiler options needed for large files configure:15717: result: no configure:15723: checking for _FILE_OFFSET_BITS value needed for large files configure:15748: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c:29: warning: left shift count >= width of type conftest.c:29: warning: left shift count >= width of type conftest.c:31: error: size of array 'off_t_is_large' is negative configure:15748: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | /* Check that off_t can represent 2**63 - 1 correctly. | We can't simply define LARGE_OFF_T to be 9223372036854775807, | since some C++ compilers masquerading as C compilers | incorrectly reject 9223372036854775807. */ | #define LARGE_OFF_T (((off_t) 1 << 62) - 1 + ((off_t) 1 << 62)) | int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721 | && LARGE_OFF_T % 2147483647 == 1) | ? 1 : -1]; | int | main () | { | | ; | return 0; | } configure:15772: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15772: $? = 0 configure:15780: result: 64 configure:15871: checking for stdlib.h configure:15871: result: yes configure:15871: checking for unistd.h configure:15871: result: yes configure:15871: checking for sys/param.h configure:15871: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15871: $? = 0 configure:15871: result: yes configure:15891: checking for getpagesize configure:15891: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:15891: $? = 0 configure:15891: result: yes configure:15900: checking for working mmap configure:16047: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16047: $? = 0 configure:16047: ./conftest configure:16047: $? = 0 configure:16057: result: yes configure:16068: checking for malloc in -lmalloc configure:16093: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lmalloc >&5 conftest.c:36: warning: conflicting types for built-in function 'malloc' /usr/bin/ld: cannot find -lmalloc collect2: ld returned 1 exit status configure:16093: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:16102: result: no configure:16115: checking for struct stat.st_blksize configure:16115: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16115: $? = 0 configure:16115: result: yes configure:16129: checking sys/resource.h usability configure:16129: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16129: $? = 0 configure:16129: result: yes configure:16129: checking sys/resource.h presence configure:16129: gcc -E conftest.c configure:16129: $? = 0 configure:16129: result: yes configure:16129: checking for sys/resource.h configure:16129: result: yes configure:16141: checking sys/times.h usability configure:16141: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16141: $? = 0 configure:16141: result: yes configure:16141: checking sys/times.h presence configure:16141: gcc -E conftest.c configure:16141: $? = 0 configure:16141: result: yes configure:16141: checking for sys/times.h configure:16141: result: yes configure:16153: checking malloc.h usability configure:16153: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16153: $? = 0 configure:16153: result: yes configure:16153: checking malloc.h presence configure:16153: gcc -E conftest.c configure:16153: $? = 0 configure:16153: result: yes configure:16153: checking for malloc.h configure:16153: result: yes configure:16165: checking glob.h usability configure:16165: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16165: $? = 0 configure:16165: result: yes configure:16165: checking glob.h presence configure:16165: gcc -E conftest.c configure:16165: $? = 0 configure:16165: result: yes configure:16165: checking for glob.h configure:16165: result: yes configure:16179: checking for mallinfo configure:16179: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16179: $? = 0 configure:16179: result: yes configure:16190: checking whether isnan is declared configure:16190: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16190: $? = 0 configure:16190: result: yes configure:16205: checking for getrlimit configure:16205: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16205: $? = 0 configure:16205: result: yes configure:16216: checking for gethostname configure:16216: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16216: $? = 0 configure:16216: result: yes configure:16283: checking for floor in -lm configure:16308: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5 conftest.c:49: warning: conflicting types for built-in function 'floor' configure:16308: $? = 0 configure:16317: result: yes configure:16330: checking for DATA support configure:16347: result: yes configure:16740: checking pthread.h usability configure:16740: gcc -std=gnu99 -c -g -O2 -I/usr/local/include conftest.c >&5 configure:16740: $? = 0 configure:16740: result: yes configure:16740: checking pthread.h presence configure:16740: gcc -E -I/usr/local/include conftest.c configure:16740: $? = 0 configure:16740: result: yes configure:16740: checking for pthread.h configure:16740: result: yes configure:16750: checking for pthread_create in -lpthread configure:16775: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib conftest.c -lpthread -lm >&5 configure:16775: $? = 0 configure:16784: result: yes configure:16893: checking zlib.h usability configure:16893: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local/include conftest.c >&5 configure:16893: $? = 0 configure:16893: result: yes configure:16893: checking zlib.h presence configure:16893: gcc -E -I/usr/local//include -I/usr/local/include conftest.c configure:16893: $? = 0 configure:16893: result: yes configure:16893: checking for zlib.h configure:16893: result: yes configure:16903: checking for library containing deflate configure:16934: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local/lib conftest.c -lpthread -lm >&5 /tmp/ccNcXz1a.o: In function `main': /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:58: undefined reference to `deflate' collect2: ld returned 1 exit status configure:16934: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:16934: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local/lib conftest.c -lz -lpthread -lm >&5 configure:16934: $? = 0 configure:16951: result: -lz configure:17137: checking szlib.h usability configure:17137: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c >&5 configure:17137: $? = 0 configure:17137: result: yes configure:17137: checking szlib.h presence configure:17137: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c configure:17137: $? = 0 configure:17137: result: yes configure:17137: checking for szlib.h configure:17137: result: yes configure:17147: checking for library containing SZ_BufftoBuffCompress configure:17178: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lz -lpthread -lm >&5 /tmp/ccK6II0n.o: In function `main': /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:60: undefined reference to `SZ_BufftoBuffCompress' collect2: ld returned 1 exit status configure:17178: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char SZ_BufftoBuffCompress (); | int | main () | { | return SZ_BufftoBuffCompress (); | ; | return 0; | } configure:17178: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lsz -lz -lpthread -lm >&5 configure:17178: $? = 0 configure:17195: result: -lsz configure:17385: checking hdf5.h usability configure:17385: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c >&5 configure:17385: $? = 0 configure:17385: result: yes configure:17385: checking hdf5.h presence configure:17385: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c configure:17385: $? = 0 configure:17385: result: yes configure:17385: checking for hdf5.h configure:17385: result: yes configure:17395: checking for library containing H5Fopen configure:17426: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lsz -lz -lpthread -lm >&5 /tmp/ccTGgCex.o: In function `main': /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:62: undefined reference to `H5Fopen' collect2: ld returned 1 exit status configure:17426: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:17426: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm >&5 configure:17426: $? = 0 configure:17443: result: -lhdf5 configure:17455: checking for library containing H5DSis_scale configure:17486: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5 -lsz -lz -lpthread -lm >&5 /tmp/ccinS5Ix.o: In function `main': /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:63: undefined reference to `H5DSis_scale' collect2: ld returned 1 exit status configure:17486: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:17486: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 configure:17486: $? = 0 configure:17503: result: -lhdf5_hl configure:17704: checking netcdf.h usability configure:17704: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c >&5 configure:17704: $? = 0 configure:17704: result: yes configure:17704: checking netcdf.h presence configure:17704: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include conftest.c configure:17704: $? = 0 configure:17704: result: yes configure:17704: checking for netcdf.h configure:17704: result: yes configure:17714: checking for library containing nc_open configure:17745: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 /tmp/cczNCyWJ.o: In function `main': /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:64: undefined reference to `nc_open' collect2: ld returned 1 exit status configure:17745: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:17745: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 configure:17745: $? = 0 configure:17762: result: -lnetcdf configure:17777: checking nc-config script configure:17781: checking for nc-config configure:17797: found /usr/local//bin/nc-config configure:17808: result: /usr/local//bin/nc-config configure:17817: checking netcdf's OpenDAP support configure:17826: result: no configure:17829: checking netcdf's nc2 support configure:17835: result: yes configure:17841: checking netcdf's nc4 support configure:17847: result: yes configure:17966: checking for library containing jas_stream_memopen configure:17997: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 /tmp/ccW7RSWQ.o: In function `main': /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:67: undefined reference to `jas_stream_memopen' collect2: ld returned 1 exit status configure:17997: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char jas_stream_memopen (); | int | main () | { | return jas_stream_memopen (); | ; | return 0; | } configure:17997: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 configure:17997: $? = 0 configure:18014: result: -ljasper configure:18134: checking grib_api.h usability configure:18134: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c >&5 configure:18134: $? = 0 configure:18134: result: yes configure:18134: checking grib_api.h presence configure:18134: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c configure:18134: $? = 0 configure:18134: result: yes configure:18134: checking for grib_api.h configure:18134: result: yes configure:18144: checking for library containing grib_get_message configure:18175: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 /tmp/ccR4oDf7.o: In function `main': /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:69: undefined reference to `grib_get_message' collect2: ld returned 1 exit status configure:18175: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:18175: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 configure:18175: $? = 0 configure:18192: result: -lgrib_api configure:18223: checking for GRIB support configure:18240: result: yes configure:18246: checking for CGRIBEX support configure:18263: result: yes configure:18269: checking for SERVICE support configure:18286: result: yes configure:18292: checking for EXTRA support configure:18309: result: yes configure:18315: checking for IEG support configure:18332: result: yes configure:18431: checking proj_api.h usability configure:18431: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c >&5 configure:18431: $? = 0 configure:18431: result: yes configure:18431: checking proj_api.h presence configure:18431: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include conftest.c configure:18431: $? = 0 configure:18431: result: yes configure:18431: checking for proj_api.h configure:18431: result: yes configure:18441: checking for library containing pj_init configure:18472: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 /tmp/ccticwNi.o: In function `main': /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:76: undefined reference to `pj_init' collect2: ld returned 1 exit status configure:18472: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pj_init (); | int | main () | { | return pj_init (); | ; | return 0; | } configure:18472: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib conftest.c -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 configure:18472: $? = 0 configure:18489: result: -lproj configure:18613: checking udunits2.h usability configure:18613: gcc -std=gnu99 -c -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include conftest.c >&5 configure:18613: $? = 0 configure:18613: result: yes configure:18613: checking udunits2.h presence configure:18613: gcc -E -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include conftest.c configure:18613: $? = 0 configure:18613: result: yes configure:18613: checking for udunits2.h configure:18613: result: yes configure:18623: checking for library containing ut_parse configure:18654: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib -L/usr/local//lib conftest.c -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 /tmp/ccxUvinB.o: In function `main': /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:78: undefined reference to `ut_parse' collect2: ld returned 1 exit status configure:18654: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | #define HAVE_LIBPROJ 1 | #define HAVE_UDUNITS2_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char ut_parse (); | int | main () | { | return ut_parse (); | ; | return 0; | } configure:18654: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib -L/usr/local//lib conftest.c -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 configure:18654: $? = 0 configure:18671: result: -ludunits2 configure:18796: checking magics_api.h usability configure:18796: gcc -std=gnu99 -c -g -O2 -I/usr/local//include/magics -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include conftest.c >&5 configure:18796: $? = 0 configure:18796: result: yes configure:18796: checking magics_api.h presence configure:18796: gcc -E -I/usr/local//include/magics -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include conftest.c configure:18796: $? = 0 configure:18796: result: yes configure:18796: checking for magics_api.h configure:18796: result: yes configure:18806: checking for library containing mag_open configure:18837: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include/magics -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib -L/usr/local//lib conftest.c -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 /tmp/ccnZqtbF.o: In function `main': /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/conftest.c:80: undefined reference to `mag_open' collect2: ld returned 1 exit status configure:18837: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | #define HAVE_LIBPROJ 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_MAGICS_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char mag_open (); | int | main () | { | return mag_open (); | ; | return 0; | } configure:18837: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local//include/magics -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib -L/usr/local//lib conftest.c -lMagPlus -ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm >&5 /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostringstream, std::allocator >::~basic_ostringstream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >& std::operator>> >(std::basic_istream >&, wchar_t&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >& std::operator>> >(std::basic_istream >&, char&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios >::widen(char) const' /usr/local//lib/libMagPlus.so: undefined reference to `virtual thunk to std::basic_ostream >::~basic_ostream()' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_streambuf >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::push_back(char)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::basic_ostream >::_M_insert(void const*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::runtime_error::runtime_error(std::basic_string, std::allocator > const&)' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ofstream >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >& std::operator>> >(std::basic_istream >&, char*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_pure_virtual' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >::operator<<(short)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::swap(std::basic_string, std::allocator >&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_streambuf >::~basic_streambuf()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >::~basic_ostream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::_Rep::_M_destroy(std::allocator const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::assign(std::basic_string, std::allocator > const&)' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ifstream >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >& std::basic_istream >::_M_extract(double&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::locale::~locale()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ifstream >::~basic_ifstream()' /usr/local//lib/libMagPlus.so: undefined reference to `typeinfo for std::basic_ostringstream, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `std::locale::locale(std::locale const&)' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::exception' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >::get(std::basic_streambuf >&, char)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >::seekp(std::fpos<__mbstate_t>)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::basic_ostream >::_M_insert(long long)' /usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_istringstream, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_stringstream, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_stringbuf, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios >::imbue(std::locale const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::rfind(char, unsigned int) const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/local//lib/libMagPlus.so: undefined reference to `std::__throw_bad_cast()' /usr/local//lib/libMagPlus.so: undefined reference to `std::_List_node_base::unhook()' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ostringstream, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::_M_mutate(unsigned int, unsigned int, unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::basic_string(std::basic_string, std::allocator > const&)' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_rethrow' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >::flush()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::substr(unsigned int, unsigned int) const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >::get(char&)' /usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_ostringstream, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios >::basic_ios()' /usr/local//lib/libMagPlus.so: undefined reference to `__gxx_personality_v0' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::_Rep::_S_create(unsigned int, unsigned int, std::allocator const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >::operator<<(float)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >& std::operator>>, std::allocator >(std::basic_istream >&, std::basic_string, std::allocator >&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::compare(char const*) const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::find_first_of(char const*, unsigned int, unsigned int) const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::assign(std::basic_string, std::allocator > const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::replace(unsigned int, unsigned int, wchar_t const*, unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::cerr' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::~basic_string()' /usr/local//lib/libMagPlus.so: undefined reference to `operator delete[](void*)' /usr/local//lib/libMagPlus.so: undefined reference to `operator new[](unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_filebuf >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::_M_replace_aux(unsigned int, unsigned int, unsigned int, char)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::compare(std::basic_string, std::allocator > const&) const' /usr/local//lib/libMagPlus.so: undefined reference to `virtual thunk to std::basic_ostream >::~basic_ostream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::ios_base::Init::Init()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >& std::ws >(std::basic_istream >&)' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_istringstream, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::_M_leak_hard()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ifstream >::basic_ifstream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::__throw_bad_alloc()' /usr/local//lib/libMagPlus.so: undefined reference to `virtual thunk to std::basic_ostringstream, std::allocator >::~basic_ostringstream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::swap(std::basic_string, std::allocator >&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::basic_string(unsigned int, wchar_t, std::allocator const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_stringbuf, std::allocator >::_M_sync(char*, unsigned int, unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ostringstream, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `std::__throw_out_of_range(char const*)' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for __cxxabiv1::__pointer_type_info' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_stringbuf, std::allocator >::str() const' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ios >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::push_back(wchar_t)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::rfind(char const*, unsigned int, unsigned int) const' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_throw' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::append(char const*)' /usr/local//lib/libMagPlus.so: undefined reference to `operator delete(void*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::_List_node_base::transfer(std::_List_node_base*, std::_List_node_base*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >::read(char*, int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::runtime_error::~runtime_error()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::find_last_not_of(char const*, unsigned int, unsigned int) const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::_Rep::_M_destroy(std::allocator const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios >::~basic_ios()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >::getline(char*, int, char)' /usr/local//lib/libMagPlus.so: undefined reference to `std::time_put > > const& std::use_facet > > >(std::locale const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::basic_string(std::basic_string, std::allocator > const&, unsigned int, unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `operator new(unsigned int, std::nothrow_t const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::erase(__gnu_cxx::__normal_iterator, std::allocator > >, __gnu_cxx::__normal_iterator, std::allocator > >)' /usr/local//lib/libMagPlus.so: undefined reference to `operator delete(void*, std::nothrow_t const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_decrement(std::_Rb_tree_node_base const*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::reserve(unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::locale::locale(char const*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::append(char const*, unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::clear()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::basic_string(unsigned int, char, std::allocator const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::terminate()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::basic_ostream >::_M_insert(long long)' /usr/local//lib/libMagPlus.so: undefined reference to `std::exception::~exception()' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_free_exception' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::append(std::basic_string, std::allocator > const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, wchar_t const*, int)' /usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_ofstream >' /usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_ifstream >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::find(char, unsigned int) const' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_get_exception_ptr' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >::seekg(long long, std::_Ios_Seekdir)' /usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_rebalance_for_erase(std::_Rb_tree_node_base*, std::_Rb_tree_node_base&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::basic_ostream >::_M_insert(unsigned long long)' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_streambuf >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ifstream >::close()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::copy(char*, unsigned int, unsigned int) const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios >::~basic_ios()' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_guard_abort' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::endl >(std::basic_ostream >&)' /usr/local//lib/libMagPlus.so: undefined reference to `virtual thunk to std::basic_ostringstream, std::allocator >::~basic_ostringstream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostringstream, std::allocator >::~basic_ostringstream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::_Rep::_S_empty_rep_storage' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::basic_ostream >::_M_insert(double)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)' /usr/local//lib/libMagPlus.so: undefined reference to `std::ios_base::ios_base()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::basic_string(char const*, unsigned int, std::allocator const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ofstream >::~basic_ofstream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::find_last_of(char const*, unsigned int, unsigned int) const' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::_M_leak_hard()' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_guard_acquire' /usr/local//lib/libMagPlus.so: undefined reference to `std::__basic_file::~__basic_file()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::reserve(unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::time_put > >::put(std::ostreambuf_iterator >, std::ios_base&, char, tm const*, char const*, char const*) const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::assign(char const*, unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::ios_base::Init::~Init()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::basic_ostream >::_M_insert(long)' /usr/local//lib/libMagPlus.so: undefined reference to `operator new(unsigned int)' /usr/local//lib/libMagPlus.so: undefined reference to `typeinfo for std::exception' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::append(std::basic_string, std::allocator > const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::cout' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::basic_ostream >::_M_insert(unsigned long long)' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_begin_catch' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::basic_ostream >::_M_insert(double)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_iostream >::~basic_iostream()' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for __cxxabiv1::__si_class_type_info' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >::tellg()' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_ios >' /usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_insert_and_rebalance(bool, std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, std::_Rb_tree_node_base&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >::put(char)' /usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_stringstream, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_stringbuf, std::allocator >::str() const' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_end_catch' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_call_unexpected' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::compare(std::basic_string, std::allocator > const&) const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::_Rep::_S_create(unsigned int, unsigned int, std::allocator const&)' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_guard_release' /usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_fstream >' /usr/local//lib/libMagPlus.so: undefined reference to `std::locale::operator=(std::locale const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::_List_node_base::hook(std::_List_node_base*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::ctype::_M_widen_init() const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_streambuf >::~basic_streambuf()' /usr/local//lib/libMagPlus.so: undefined reference to `typeinfo for std::basic_ostream >' /usr/local//lib/libMagPlus.so: undefined reference to `__cxa_allocate_exception' /usr/local//lib/libMagPlus.so: undefined reference to `std::ios_base::~ios_base()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >& std::basic_istream >::_M_extract(float&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >::operator>>(int&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >& std::getline, std::allocator >(std::basic_istream >&, std::basic_string, std::allocator >&, char)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::find_first_not_of(char const*, unsigned int, unsigned int) const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::operator<< , std::allocator >(std::basic_ostream >&, std::basic_string, std::allocator > const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_decrement(std::_Rb_tree_node_base*)' /usr/local//lib/libMagPlus.so: undefined reference to `typeinfo for std::runtime_error' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >::operator<<(int)' /usr/local//lib/libMagPlus.so: undefined reference to `__dynamic_cast' /usr/local//lib/libMagPlus.so: undefined reference to `std::_Rb_tree_increment(std::_Rb_tree_node_base const*)' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for __cxxabiv1::__vmi_class_type_info' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostringstream, std::allocator >::~basic_ostringstream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::__throw_length_error(char const*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::append(unsigned int, char)' /usr/local//lib/libMagPlus.so: undefined reference to `VTT for std::basic_ostringstream, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_fstream >' /usr/local//lib/libMagPlus.so: undefined reference to `std::runtime_error::what() const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >::~basic_ostream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/local//lib/libMagPlus.so: undefined reference to `std::_List_node_base::swap(std::_List_node_base&, std::_List_node_base&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_fstream >::~basic_fstream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios >::setstate(std::_Ios_Iostate)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_stringstream, std::allocator >::~basic_stringstream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::basic_string(char const*, std::allocator const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::locale::classic()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_filebuf >::close()' /usr/local//lib/libMagPlus.so: undefined reference to `std::nothrow' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::runtime_error' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istringstream, std::allocator >::~basic_istringstream()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::find(char const*, unsigned int, unsigned int) const' /usr/local//lib/libMagPlus.so: undefined reference to `std::exception::what() const' /usr/local//lib/libMagPlus.so: undefined reference to `std::__throw_logic_error(char const*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >::write(char const*, int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::exception::~exception()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::basic_string(std::basic_string, std::allocator > const&)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::basic_ostream >::_M_insert(unsigned long)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ostream >& std::basic_ostream >::_M_insert(bool)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_istream >::ignore(int, int)' /usr/local//lib/libMagPlus.so: undefined reference to `std::locale::locale()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::assign(char const*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::~basic_string()' /usr/local//lib/libMagPlus.so: undefined reference to `vtable for std::basic_stringbuf, std::allocator >' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ofstream >::close()' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/local//lib/libMagPlus.so: undefined reference to `std::__basic_file::is_open() const' /usr/local//lib/libMagPlus.so: undefined reference to `std::basic_string, std::allocator >::_Rep::_S_empty_rep_storage' collect2: ld returned 1 exit status configure:18837: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.0rc4" | #define PACKAGE_STRING "cdo 1.6.0rc4" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.6.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" | #define USER_NAME "kostas" | #define HOST_NAME "diogenis.hydromech.tuc.gr" | #define SYSTEM_TYPE "i686-pc-linux-gnu" | #define HAVE_LIBM 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_H 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_LIBJASPER 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | #define HAVE_LIBPROJ 1 | #define HAVE_UDUNITS2_H 1 | #define HAVE_LIBUDUNITS2 1 | #define HAVE_MAGICS_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char mag_open (); | int | main () | { | return mag_open (); | ; | return 0; | } configure:18854: result: no configure:18863: error: Could not link to magics library ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=i686-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_have_decl_isnan=yes ac_cv_header_dlfcn_h=yes ac_cv_header_glob_h=yes ac_cv_header_grib_api_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_magics_api_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_proj_api_h=yes ac_cv_header_pthread_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_szlib_h=yes ac_cv_header_udunits2_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=i686-pc-linux-gnu ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_lib_pthread_pthread_create=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_NC_CONFIG=/usr/local//bin/nc-config ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_LD=/usr/bin/ld ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cc_gcc_c_o=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_SZ_BufftoBuffCompress=-lsz ac_cv_search_deflate=-lz ac_cv_search_grib_get_message=-lgrib_api ac_cv_search_jas_stream_memopen=-ljasper ac_cv_search_mag_open=no ac_cv_search_nc_open=-lnetcdf ac_cv_search_pj_init=-lproj ac_cv_search_ut_parse=-ludunits2 ac_cv_sys_file_offset_bits=64 ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX=/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1966080 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AR='ar' AS='as' AUTOCONF='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/missing --run autoconf' AUTOHEADER='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/missing --run autoheader' AUTOMAKE='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/missing --run automake-1.11' AWK='gawk' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CLDFLAGS='' CLIBS='' CPP='gcc -E' CPPFLAGS='-I/usr/local//include/magics -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local//include -I/usr/local/include -I/usr/local//include -I/usr/local//include' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DLLTOOL=':' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='yes' ENABLE_DATA='yes' ENABLE_EXTRA='yes' ENABLE_GRIB='yes' ENABLE_IEG='yes' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='' ENABLE_SERVICE='yes' EXEEXT='' FCFLAGS='' FGREP='/bin/grep -F' GREP='/bin/grep' GRIB_API_INCLUDE=' -I/usr/local//include' GRIB_API_LIBS=' -L/usr/local//lib -lgrib_api' HDF5_INCLUDE=' -I/usr/local//include' HDF5_LIBS=' -L/usr/local//lib -lhdf5' HDF5_ROOT='/usr/local/' HOST_NAME='diogenis.hydromech.tuc.gr' INCLUDES='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' JASPER_LIBS=' -L/usr/local//lib -ljasper' LD='/usr/bin/ld' LDFLAGS='-L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local//lib -L/usr/local/lib -L/usr/local//lib -L/usr/local//lib' LIBOBJS='' LIBS='-ludunits2 -lproj -lgrib_api -ljasper -lnetcdf -lhdf5_hl -lhdf5 -lsz -lz -lpthread -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='/usr/local/' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/missing --run makeinfo' MKDIR_P='/bin/mkdir -p' NC_CONFIG='/usr/local//bin/nc-config' NETCDF_INCLUDE=' -I/usr/local//include' NETCDF_LIBS=' -L/usr/local//lib -lnetcdf' NETCDF_ROOT='/usr/local/' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.6.0rc4' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.6.0rc4' PATH_SEPARATOR=':' PROJ_INCLUDE=' -I/usr/local//include' PROJ_LDFLAGS=' -L/usr/local//lib -lproj' PTHREAD_CC='' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='i686-pc-linux-gnu' SZLIB_INCLUDE=' -I/usr/local//include' SZLIB_LIBS=' -L/usr/local//lib -lsz' THREADS_INCLUDE=' -I/usr/local/include' THREADS_LIBS=' -L/usr/local/lib -lpthread' UDUNITS_INCLUDE=' -I/usr/local//include' UDUNITS_LDFLAGS=' -L/usr/local//lib -ludunits2' USER_NAME='kostas' VERSION='1.6.0rc4' XML2_LIBS='' ZLIB_INCLUDE=' -I/usr/local//include' ZLIB_LIBS=' -L/usr/local//lib -lz' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='i686-pc-linux-gnu' build_alias='' build_cpu='i686' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='i686-pc-linux-gnu' host_alias='' host_cpu='i686' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/HYDROMECH/kostas/Desktop/cdo1/cdo-1.6.0rc4/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.6.0rc4" #define PACKAGE_STRING "cdo 1.6.0rc4" #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" #define PACKAGE_URL "" #define PACKAGE "cdo" #define VERSION "1.6.0rc4" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define _FILE_OFFSET_BITS 64 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GLOB_H 1 #define HAVE_MALLINFO 1 #define HAVE_DECL_ISNAN 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMP_VERSION "gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)" #define USER_NAME "kostas" #define HOST_NAME "diogenis.hydromech.tuc.gr" #define SYSTEM_TYPE "i686-pc-linux-gnu" #define HAVE_LIBM 1 #define ENABLE_DATA 1 #define HAVE_PTHREAD_H 1 #define HAVE_LIBPTHREAD 1 #define HAVE_ZLIB_H 1 #define HAVE_LIBZ 1 #define HAVE_SZLIB_H 1 #define HAVE_LIBSZ 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_NETCDF2 1 #define HAVE_NETCDF4 1 #define HAVE_LIBJASPER 1 #define HAVE_GRIB_API_H 1 #define HAVE_LIBGRIB_API 1 #define HAVE_LIBGRIB 1 #define HAVE_LIBCGRIBEX 1 #define HAVE_LIBSERVICE 1 #define HAVE_LIBEXTRA 1 #define HAVE_LIBIEG 1 #define HAVE_PROJ_API_H 1 #define HAVE_LIBPROJ 1 #define HAVE_UDUNITS2_H 1 #define HAVE_LIBUDUNITS2 1 #define HAVE_MAGICS_API_H 1 configure: exit 1