This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdi configure 1.7.0, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --disable-option-checking --prefix=/usr/local --with-netcdf=/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib --with-hdf5=/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib --with-grib_api=/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/ CFLAGS=-fPIC LDFLAGS=-L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib LIBS=-lstdc++ CPPFLAGS=-I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include --cache-file=/dev/null --srcdir=. ## --------- ## ## Platform. ## ## --------- ## hostname = service uname -m = x86_64 uname -r = 2.6.32-504.el6.x86_64 uname -s = Linux uname -v = #1 SMP Wed Oct 15 04:27:16 UTC 2014 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/JPEG/jpeg-6b/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/GSL/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/FREETYPE/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/HDF4/hdf-4.2.11-linux-centos6-x86_64-gcc447/bin PATH: /usr/local/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/NCL/bin PATH: /RHMC/soft/netcdf/bin PATH: /opt/intel/composer_xe_2011_sp1.6.233/bin/intel64 PATH: /opt/intel/impi/4.0.3/intel64/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/JPEG/jpeg-6b/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/GSL/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/FREETYPE/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/HDF4/hdf-4.2.11-linux-centos6-x86_64-gcc447/bin PATH: /usr/local/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/NCL/bin PATH: /RHMC/soft/netcdf/bin PATH: /opt/intel/composer_xe_2011_sp1.6.233/bin/intel64 PATH: /opt/intel/impi/4.0.3/intel64/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /opt/ibutils/bin PATH: /usr/sbin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/soft/java/jdk1.8.0_65/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/soft/java/jdk1.8.0_65/jre/bin PATH: /RHMC/users/models/wrf/bin PATH: /usr/sbin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/soft/java/jdk1.8.0_65/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/soft/java/jdk1.8.0_65/jre/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2996: checking build system type configure:3010: result: x86_64-unknown-linux-gnu configure:3030: checking host system type configure:3043: result: x86_64-unknown-linux-gnu configure:3082: checking for a BSD-compatible install configure:3150: result: /usr/bin/install -c configure:3161: checking whether build environment is sane configure:3216: result: yes configure:3367: checking for a thread-safe mkdir -p configure:3406: result: /bin/mkdir -p configure:3413: checking for gawk configure:3429: found /bin/gawk configure:3440: result: gawk configure:3451: checking whether make sets $(MAKE) configure:3473: result: yes configure:3502: checking whether make supports nested variables configure:3519: result: yes configure:3647: checking whether to enable maintainer-specific portions of Makefiles configure:3656: result: no configure:3714: checking for gcc configure:3730: found /usr/bin/gcc configure:3741: result: gcc configure:3775: checking for style of include used by make configure:3803: result: GNU configure:3874: checking for gcc configure:3901: result: gcc configure:4130: checking for C compiler version configure:4139: gcc --version >&5 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4150: $? = 0 configure:4139: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) configure:4150: $? = 0 configure:4139: gcc -V >&5 gcc: '-V' option must have argument configure:4150: $? = 1 configure:4139: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:4150: $? = 1 configure:4170: checking whether the C compiler works configure:4192: gcc -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:4196: $? = 0 configure:4244: result: yes configure:4247: checking for C compiler default output file name configure:4249: result: a.out configure:4255: checking for suffix of executables configure:4262: gcc -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:4266: $? = 0 configure:4288: result: configure:4310: checking whether we are cross compiling configure:4318: gcc -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:4322: $? = 0 configure:4329: ./conftest configure:4333: $? = 0 configure:4348: result: no configure:4353: checking for suffix of object files configure:4375: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:4379: $? = 0 configure:4400: result: o configure:4404: checking whether we are using the GNU C compiler configure:4423: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:4423: $? = 0 configure:4432: result: yes configure:4441: checking whether gcc accepts -g configure:4461: gcc -c -g -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:4461: $? = 0 configure:4502: result: yes configure:4519: checking for gcc option to accept ISO C89 configure:4583: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:4583: $? = 0 configure:4596: result: none needed configure:4621: checking whether gcc understands -c and -o together configure:4643: gcc -c conftest.c -o conftest2.o configure:4646: $? = 0 configure:4643: gcc -c conftest.c -o conftest2.o configure:4646: $? = 0 configure:4658: result: yes configure:4677: checking dependency style of gcc configure:4788: result: gcc3 configure:4803: checking for gcc option to accept ISO C99 configure:4952: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 conftest.c:62: error: expected ';', ',' or ')' before 'text' conftest.c: In function 'main': conftest.c:116: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' conftest.c:116: error: 'newvar' undeclared (first use in this function) conftest.c:116: error: (Each undeclared identifier is reported only once conftest.c:116: error: for each function it appears in.) conftest.c:126: error: 'for' loop initial declarations are only allowed in C99 mode conftest.c:126: note: use option -std=c99 or -std=gnu99 to compile your code configure:4952: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:4952: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:4952: $? = 0 configure:4972: result: -std=gnu99 configure:4982: checking for C/C++ restrict keyword configure:5007: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:5007: $? = 0 configure:5015: result: __restrict configure:5134: checking for Fortran compiler version configure:5143: no --version >&5 ./configure: line 5145: no: command not found configure:5154: $? = 127 configure:5143: no -v >&5 ./configure: line 5145: no: command not found configure:5154: $? = 127 configure:5143: no -V >&5 ./configure: line 5145: no: command not found configure:5154: $? = 127 configure:5143: no -qversion >&5 ./configure: line 5145: no: command not found configure:5154: $? = 127 configure:5163: checking whether we are using the GNU Fortran compiler configure:5176: no -c conftest.F >&5 ./configure: line 1821: no: command not found configure:5176: $? = 127 configure: failed program was: | program conftest | #ifndef __GNUC__ | choke me | #endif | | end configure:5185: result: no configure:5191: checking whether no accepts -g configure:5202: no -c -g conftest.f >&5 ./configure: line 1821: no: command not found configure:5202: $? = 127 configure: failed program was: | program conftest | | end configure:5210: result: no configure:6061: checking for g77 configure:6091: result: no configure:6061: checking for xlf configure:6091: result: no configure:6061: checking for f77 configure:6091: result: no configure:6061: checking for frt configure:6091: result: no configure:6061: checking for pgf77 configure:6091: result: no configure:6061: checking for cf77 configure:6091: result: no configure:6061: checking for fort77 configure:6091: result: no configure:6061: checking for fl32 configure:6091: result: no configure:6061: checking for af77 configure:6091: result: no configure:6061: checking for xlf90 configure:6091: result: no configure:6061: checking for f90 configure:6091: result: no configure:6061: checking for pgf90 configure:6091: result: no configure:6061: checking for pghpf configure:6091: result: no configure:6061: checking for epcf90 configure:6091: result: no configure:6061: checking for gfortran configure:6077: found /usr/bin/gfortran configure:6088: result: gfortran configure:6114: checking for Fortran 77 compiler version configure:6123: gfortran --version >&5 GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11) Copyright (C) 2010 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:6134: $? = 0 configure:6123: gfortran -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) configure:6134: $? = 0 configure:6123: gfortran -V >&5 gfortran: '-V' option must have argument configure:6134: $? = 1 configure:6123: gfortran -qversion >&5 gfortran: unrecognized option '-qversion' gfortran: no input files configure:6134: $? = 1 configure:6143: checking whether we are using the GNU Fortran 77 compiler configure:6156: gfortran -c conftest.F >&5 configure:6156: $? = 0 configure:6165: result: yes configure:6171: checking whether gfortran accepts -g configure:6182: gfortran -c -g conftest.f >&5 configure:6182: $? = 0 configure:6190: result: yes configure:6277: checking for g++ configure:6293: found /usr/bin/g++ configure:6304: result: g++ configure:6331: checking for C++ compiler version configure:6340: g++ --version >&5 g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6351: $? = 0 configure:6340: g++ -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) configure:6351: $? = 0 configure:6340: g++ -V >&5 g++: '-V' option must have argument configure:6351: $? = 1 configure:6340: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:6351: $? = 1 configure:6355: checking whether we are using the GNU C++ compiler configure:6374: g++ -c -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp >&5 configure:6374: $? = 0 configure:6383: result: yes configure:6392: checking whether g++ accepts -g configure:6412: g++ -c -g -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp >&5 configure:6412: $? = 0 configure:6453: result: yes configure:6478: checking dependency style of g++ configure:6589: result: gcc3 configure:6607: setting up libtool configure:6610: checking any compiler has problems building shared objects configure:6623: testing if no cannot build working shared objects configure:6636: result: no configure:6650: testing if gfortran cannot build working shared objects configure:6663: result: no configure:6678: testing if gcc -std=gnu99 cannot build working shared objects configure:6691: result: no configure:6699: result: no configure:6751: checking how to print strings configure:6778: result: printf configure:6799: checking for a sed that does not truncate output configure:6863: result: /bin/sed configure:6881: checking for grep that handles long lines and -e configure:6939: result: /bin/grep configure:6944: checking for egrep configure:7006: result: /bin/grep -E configure:7011: checking for fgrep configure:7073: result: /bin/grep -F configure:7108: checking for ld used by gcc -std=gnu99 configure:7175: result: /usr/bin/ld configure:7182: checking if the linker (/usr/bin/ld) is GNU ld configure:7197: result: yes configure:7209: checking for BSD- or MS-compatible name lister (nm) configure:7258: result: /usr/bin/nm -B configure:7388: checking the name lister (/usr/bin/nm -B) interface configure:7395: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7398: /usr/bin/nm -B "conftest.o" configure:7401: output 0000000000000000 B some_variable configure:7408: result: BSD nm configure:7411: checking whether ln -s works configure:7415: result: yes configure:7423: checking the maximum length of command line arguments configure:7553: result: 1966080 configure:7570: checking whether the shell understands some XSI constructs configure:7580: result: yes configure:7584: checking whether the shell understands "+=" configure:7590: result: yes configure:7625: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format configure:7665: result: func_convert_file_noop configure:7672: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format configure:7692: result: func_convert_file_noop configure:7699: checking for /usr/bin/ld option to reload object files configure:7706: result: -r configure:7780: checking for objdump configure:7796: found /usr/bin/objdump configure:7807: result: objdump configure:7839: checking how to recognize dependent libraries configure:8041: result: pass_all configure:8126: checking for dlltool configure:8156: result: no configure:8186: checking how to associate runtime and link libraries configure:8213: result: printf %s\n configure:8273: checking for ar configure:8289: found /usr/bin/ar configure:8300: result: ar configure:8337: checking for archiver @FILE support configure:8354: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:8354: $? = 0 configure:8357: ar cru libconftest.a @conftest.lst >&5 configure:8360: $? = 0 configure:8365: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:8368: $? = 1 configure:8380: result: @ configure:8438: checking for strip configure:8454: found /usr/bin/strip configure:8465: result: strip configure:8537: checking for ranlib configure:8553: found /usr/bin/ranlib configure:8564: result: ranlib configure:8666: checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object configure:8786: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:8789: $? = 0 configure:8793: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:8796: $? = 0 configure:8862: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c conftstm.o >&5 configure:8865: $? = 0 configure:8903: result: ok configure:8940: checking for sysroot configure:8970: result: no configure:9047: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:9050: $? = 0 configure:9226: checking for mt configure:9256: result: no configure:9276: checking if : is a manifest tool configure:9282: : '-?' configure:9290: result: no configure:9932: checking how to run the C preprocessor configure:9963: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:9963: $? = 0 configure:9977: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c conftest.c:13:28: error: ac_nonexistent.h: No such file or directory configure:9977: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | /* end confdefs.h. */ | #include configure:10002: result: gcc -std=gnu99 -E configure:10022: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:10022: $? = 0 configure:10036: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c conftest.c:13:28: error: ac_nonexistent.h: No such file or directory configure:10036: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | /* end confdefs.h. */ | #include configure:10065: checking for ANSI C header files configure:10085: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10085: $? = 0 configure:10158: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:10158: $? = 0 configure:10158: ./conftest configure:10158: $? = 0 configure:10169: result: yes configure:10182: checking for sys/types.h configure:10182: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10182: $? = 0 configure:10182: result: yes configure:10182: checking for sys/stat.h configure:10182: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10182: $? = 0 configure:10182: result: yes configure:10182: checking for stdlib.h configure:10182: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10182: $? = 0 configure:10182: result: yes configure:10182: checking for string.h configure:10182: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10182: $? = 0 configure:10182: result: yes configure:10182: checking for memory.h configure:10182: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10182: $? = 0 configure:10182: result: yes configure:10182: checking for strings.h configure:10182: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10182: $? = 0 configure:10182: result: yes configure:10182: checking for inttypes.h configure:10182: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10182: $? = 0 configure:10182: result: yes configure:10182: checking for stdint.h configure:10182: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10182: $? = 0 configure:10182: result: yes configure:10182: checking for unistd.h configure:10182: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10182: $? = 0 configure:10182: result: yes configure:10196: checking for dlfcn.h configure:10196: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10196: $? = 0 configure:10196: result: yes configure:10413: checking for objdir configure:10428: result: .libs configure:10699: checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions configure:10717: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:10721: $? = 0 configure:10734: result: no configure:11061: checking for gcc -std=gnu99 option to produce PIC configure:11068: result: -fPIC -DPIC configure:11076: checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works configure:11094: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -fPIC -DPIC -DPIC conftest.c >&5 configure:11098: $? = 0 configure:11111: result: yes configure:11140: checking if gcc -std=gnu99 static flag -static works configure:11168: result: no configure:11183: checking if gcc -std=gnu99 supports -c -o file.o configure:11204: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -o out/conftest2.o conftest.c >&5 configure:11208: $? = 0 configure:11230: result: yes configure:11238: checking if gcc -std=gnu99 supports -c -o file.o configure:11285: result: yes configure:11318: checking whether the gcc -std=gnu99 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:12473: result: yes configure:12510: checking whether -lc should be explicitly linked in configure:12518: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:12521: $? = 0 configure:12536: gcc -std=gnu99 -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:12539: $? = 0 configure:12553: result: no configure:12713: checking dynamic linker characteristics configure:13224: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -Wl,-rpath -Wl,/foo conftest.c -lstdc++ >&5 configure:13224: $? = 0 configure:13446: result: GNU/Linux ld.so configure:13553: checking how to hardcode library paths into programs configure:13578: result: immediate configure:14118: checking whether stripping libraries is possible configure:14123: result: yes configure:14158: checking if libtool supports shared libraries configure:14160: result: yes configure:14163: checking whether to build shared libraries configure:14184: result: yes configure:14187: checking whether to build static libraries configure:14191: result: yes configure:14214: checking how to run the C++ preprocessor configure:14241: g++ -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp configure:14241: $? = 0 configure:14255: g++ -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory configure:14255: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:14280: result: g++ -E configure:14300: g++ -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp configure:14300: $? = 0 configure:14314: g++ -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory configure:14314: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:14483: checking for ld used by g++ configure:14550: result: /usr/bin/ld -m elf_x86_64 configure:14557: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:14572: result: yes configure:14627: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:15632: result: yes configure:15668: g++ -c -g -O2 -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp >&5 configure:15671: $? = 0 configure:16191: checking for g++ option to produce PIC configure:16198: result: -fPIC -DPIC configure:16206: checking if g++ PIC flag -fPIC -DPIC works configure:16224: g++ -c -g -O2 -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -fPIC -DPIC -DPIC conftest.cpp >&5 configure:16228: $? = 0 configure:16241: result: yes configure:16264: checking if g++ static flag -static works configure:16292: result: no configure:16304: checking if g++ supports -c -o file.o configure:16325: g++ -c -g -O2 -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -o out/conftest2.o conftest.cpp >&5 configure:16329: $? = 0 configure:16351: result: yes configure:16356: checking if g++ supports -c -o file.o configure:16403: result: yes configure:16433: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:16469: result: yes configure:16610: checking dynamic linker characteristics configure:17277: result: GNU/Linux ld.so configure:17330: checking how to hardcode library paths into programs configure:17355: result: immediate configure:17503: checking if libtool supports shared libraries configure:17505: result: yes configure:17508: checking whether to build shared libraries configure:17528: result: yes configure:17531: checking whether to build static libraries configure:17535: result: yes configure:17856: checking for gfortran option to produce PIC configure:17863: result: -fPIC configure:17871: checking if gfortran PIC flag -fPIC works configure:17889: gfortran -c -g -O2 -fPIC conftest.f >&5 configure:17893: $? = 0 configure:17906: result: yes configure:17929: checking if gfortran static flag -static works configure:17957: result: no configure:17969: checking if gfortran supports -c -o file.o configure:17990: gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:17994: $? = 0 configure:18016: result: yes configure:18021: checking if gfortran supports -c -o file.o configure:18068: result: yes configure:18098: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:19203: result: yes configure:19344: checking dynamic linker characteristics configure:20005: result: GNU/Linux ld.so configure:20058: checking how to hardcode library paths into programs configure:20083: result: immediate configure:23004: creating ./config.lt ## ------------------ ## ## Running config.lt. ## ## ------------------ ## config.lt:796: creating libtool configure:25136: checking whether byte ordering is bigendian configure:25151: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 conftest.c:26: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'a' configure:25151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #ifndef __APPLE_CC__ | not a universal capable compiler | #endif | typedef int dummy; | configure:25196: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:25196: $? = 0 configure:25214: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 conftest.c: In function 'main': conftest.c:32: error: 'not' undeclared (first use in this function) conftest.c:32: error: (Each undeclared identifier is reported only once conftest.c:32: error: for each function it appears in.) conftest.c:32: error: expected ';' before 'big' configure:25214: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:25342: result: no configure:25369: checking for special C compiler options needed for large files configure:25414: result: no configure:25420: checking for _FILE_OFFSET_BITS value needed for large files configure:25445: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:25445: $? = 0 configure:25477: result: no configure:25568: checking for stdlib.h configure:25568: result: yes configure:25568: checking for unistd.h configure:25568: result: yes configure:25568: checking for sys/param.h configure:25568: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:25568: $? = 0 configure:25568: result: yes configure:25588: checking for getpagesize configure:25588: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lstdc++ configure:25588: $? = 0 configure:25588: result: yes configure:25597: checking for working mmap configure:25744: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lstdc++ configure:25744: $? = 0 configure:25744: ./conftest configure:25744: $? = 0 configure:25754: result: yes configure:25765: checking for malloc in -lmalloc configure:25790: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lmalloc -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lmalloc -lstdc++ conftest.c:37: warning: conflicting types for built-in function 'malloc' /usr/bin/ld: cannot find -lmalloc collect2: ld returned 1 exit status configure:25790: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:25799: result: no configure:25812: checking for struct stat.st_blksize configure:25812: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:25812: $? = 0 configure:25812: result: yes configure:25827: checking malloc.h usability configure:25827: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:25827: $? = 0 configure:25827: result: yes configure:25827: checking malloc.h presence configure:25827: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:25827: $? = 0 configure:25827: result: yes configure:25827: checking for malloc.h configure:25827: result: yes configure:25827: checking uuid.h usability configure:25827: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 conftest.c:65:18: error: uuid.h: No such file or directory configure:25827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:25827: result: no configure:25827: checking uuid.h presence configure:25827: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c conftest.c:32:18: error: uuid.h: No such file or directory configure:25827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | #include configure:25827: result: no configure:25827: checking for uuid.h configure:25827: result: no configure:25827: checking uuid/uuid.h usability configure:25827: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 conftest.c:65:23: error: uuid/uuid.h: No such file or directory configure:25827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:25827: result: no configure:25827: checking uuid/uuid.h presence configure:25827: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c conftest.c:32:23: error: uuid/uuid.h: No such file or directory configure:25827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | #include configure:25827: result: no configure:25827: checking for uuid/uuid.h configure:25827: result: no configure:25839: checking execinfo.h usability configure:25839: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:25839: $? = 0 configure:25839: result: yes configure:25839: checking execinfo.h presence configure:25839: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:25839: $? = 0 configure:25839: result: yes configure:25839: checking for execinfo.h configure:25839: result: yes configure:25850: checking size parameter type for backtrace() configure:25882: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 conftest.c:36: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'backtrace' conftest.c:37: error: expected declaration specifiers or '...' before 'size_t' conftest.c:37: error: conflicting types for 'backtrace_symbols' /usr/include/execinfo.h:33: note: previous declaration of 'backtrace_symbols' was here configure:25882: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | /* end confdefs.h. */ | | #include | extern | size_t backtrace(void **addrlist, size_t len); | char **backtrace_symbols(void *const *buffer, size_t size); | | int | main () | { | | ; | return 0; | } configure:25882: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:25882: $? = 0 configure:25895: result: int configure:25905: checking for library containing backtrace configure:25936: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lstdc++ configure:25936: $? = 0 configure:25953: result: none required configure:25971: checking for mallinfo configure:25971: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lstdc++ configure:25971: $? = 0 configure:25971: result: yes configure:25982: checking for getline configure:25982: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lstdc++ configure:25982: $? = 0 configure:25982: result: yes configure:25991: checking for uuid_generate in -luuid configure:26016: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -luuid -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -luuid -lstdc++ /usr/bin/ld: cannot find -luuid collect2: ld returned 1 exit status configure:26016: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char uuid_generate (); | int | main () | { | return uuid_generate (); | ; | return 0; | } configure:26025: result: no configure:26047: checking for uuid_create configure:26047: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lstdc++ /tmp/ccFyP5jk.o: In function `main': conftest.c:(.text+0xa): undefined reference to `uuid_create' collect2: ld returned 1 exit status configure:26047: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | /* end confdefs.h. */ | /* Define uuid_create to an innocuous variant, in case declares uuid_create. | For example, HP-UX 11i declares gettimeofday. */ | #define uuid_create innocuous_uuid_create | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char uuid_create (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef uuid_create | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char uuid_create (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_uuid_create || defined __stub___uuid_create | choke me | #endif | | int | main () | { | return uuid_create (); | ; | return 0; | } configure:26047: result: no configure:26076: checking whether isnan is declared configure:26076: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:26076: $? = 0 configure:26076: result: yes configure:26092: checking whether __builtin_ctz is declared configure:26092: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:26092: $? = 0 configure:26092: result: yes configure:26161: checking for floor in -lm configure:26186: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lm -lstdc++ conftest.c:50: warning: conflicting types for built-in function 'floor' configure:26186: $? = 0 configure:26195: result: yes configure:26341: checking if compiler needs -Werror to reject unknown flags configure:26357: gcc -std=gnu99 -c -fPIC -Werror -Wunknown-warning-option -Wsizeof-array-argument -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 cc1: error: unrecognized command line option "-Wunknown-warning-option" cc1: error: unrecognized command line option "-Wsizeof-array-argument" configure:26357: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | int foo(void); | int | main () | { | foo() | ; | return 0; | } configure:26362: result: no configure:26428: checking for the pthreads library -lpthreads configure:26466: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lpthreads -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lpthreads -lm -lstdc++ /usr/bin/ld: cannot find -lpthreads collect2: ld returned 1 exit status configure:26466: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:26475: result: no configure:26373: checking whether pthreads work without any flags configure:26466: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lm -lstdc++ /tmp/ccLItMxt.o: In function `main': conftest.c:(.text+0x44): undefined reference to `pthread_create' conftest.c:(.text+0x55): undefined reference to `pthread_join' conftest.c:(.text+0xc0): undefined reference to `__pthread_register_cancel' conftest.c:(.text+0xcf): undefined reference to `__pthread_unregister_cancel' collect2: ld returned 1 exit status configure:26466: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:26475: result: no configure:26378: checking whether pthreads work with -Kthread configure:26466: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -Kthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -Kthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lm -lstdc++ -Kthread gcc: unrecognized option '-Kthread' gcc: unrecognized option '-Kthread' /tmp/cctLApmO.o: In function `main': conftest.c:(.text+0x44): undefined reference to `pthread_create' conftest.c:(.text+0x55): undefined reference to `pthread_join' conftest.c:(.text+0xc0): undefined reference to `__pthread_register_cancel' conftest.c:(.text+0xcf): undefined reference to `__pthread_unregister_cancel' collect2: ld returned 1 exit status configure:26466: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:26475: result: no configure:26378: checking whether pthreads work with -kthread configure:26466: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -kthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -kthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lm -lstdc++ -kthread gcc: unrecognized option '-kthread' gcc: unrecognized option '-kthread' /tmp/cca7er0W.o: In function `main': conftest.c:(.text+0x44): undefined reference to `pthread_create' conftest.c:(.text+0x55): undefined reference to `pthread_join' conftest.c:(.text+0xc0): undefined reference to `__pthread_register_cancel' conftest.c:(.text+0xcf): undefined reference to `__pthread_unregister_cancel' collect2: ld returned 1 exit status configure:26466: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:26475: result: no configure:26428: checking for the pthreads library -llthread configure:26466: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -llthread -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -llthread -lm -lstdc++ /usr/bin/ld: cannot find -llthread collect2: ld returned 1 exit status configure:26466: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:26475: result: no configure:26378: checking whether pthreads work with -pthread configure:26466: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lm -lstdc++ -pthread configure:26466: $? = 0 configure:26475: result: yes configure:26494: checking for joinable pthread attribute configure:26509: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lm -lstdc++ -pthread configure:26509: $? = 0 configure:26515: result: PTHREAD_CREATE_JOINABLE configure:26525: checking if more special flags are required for pthreads configure:26540: result: no configure:26546: checking for PTHREAD_PRIO_INHERIT configure:26563: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lm -lstdc++ -pthread conftest.c: In function 'main': conftest.c:48: error: 'PTHREAD_PRIO_INHERIT' undeclared (first use in this function) conftest.c:48: error: (Each undeclared identifier is reported only once conftest.c:48: error: for each function it appears in.) configure:26563: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | int | main () | { | int i = PTHREAD_PRIO_INHERIT; | ; | return 0; | } configure:26572: result: no configure:26911: checking zlib.h usability configure:26911: gcc -std=gnu99 -c -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:26911: $? = 0 configure:26911: result: yes configure:26911: checking zlib.h presence configure:26911: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:26911: $? = 0 configure:26911: result: yes configure:26911: checking for zlib.h configure:26911: result: yes configure:26921: checking for library containing deflate configure:26952: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lm -lstdc++ -pthread /tmp/ccts2k4p.o: In function `main': conftest.c:(.text+0xa): undefined reference to `deflate' collect2: ld returned 1 exit status configure:26952: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:26952: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lz -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lz -lm -lstdc++ -pthread configure:26952: $? = 0 configure:26969: result: -lz configure:27159: checking for szlib library configure:27161: result: suppressed configure:27327: checking hdf5.h usability configure:27327: gcc -std=gnu99 -c -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:27327: $? = 0 configure:27327: result: yes configure:27327: checking hdf5.h presence configure:27327: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:27327: $? = 0 configure:27327: result: yes configure:27327: checking for hdf5.h configure:27327: result: yes configure:27337: checking for library containing H5Fopen configure:27368: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lz -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -lz -lm -lstdc++ -pthread /tmp/cc8Nw8lb.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5Fopen' collect2: ld returned 1 exit status configure:27368: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:27368: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lhdf5 -lz -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5.so -lrt -ldl -lz -lm -lstdc++ -pthread -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib configure:27368: $? = 0 configure:27385: result: -lhdf5 configure:27397: checking for library containing H5DSis_scale configure:27428: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lhdf5 -lz -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5.so -lrt -ldl -lz -lm -lstdc++ -pthread -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib /tmp/ccePN4bY.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5DSis_scale' collect2: ld returned 1 exit status configure:27428: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:27428: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lhdf5_hl -lhdf5 -lz -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5_hl.so /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5.so -lrt -ldl -lz -lm -lstdc++ -pthread -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib configure:27428: $? = 0 configure:27445: result: -lhdf5_hl configure:27652: checking netcdf.h usability configure:27652: gcc -std=gnu99 -c -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:27652: $? = 0 configure:27652: result: yes configure:27652: checking netcdf.h presence configure:27652: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:27652: $? = 0 configure:27652: result: yes configure:27652: checking for netcdf.h configure:27652: result: yes configure:27662: checking for library containing nc_open configure:27693: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lhdf5_hl -lhdf5 -lz -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5_hl.so /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5.so -lrt -ldl -lz -lm -lstdc++ -pthread -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib /tmp/ccFIBT8U.o: In function `main': conftest.c:(.text+0xa): undefined reference to `nc_open' collect2: ld returned 1 exit status configure:27693: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:27693: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lz -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib /data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/libnetcdf.so -L/RHMC/soft/hdf5/lib -L/RHMC/soft/zlib/lib -L/RHMC/soft/netcdf/lib /RHMC/soft/hdf5/lib/libhdf5_hl.so /RHMC/soft/hdf5/lib/libhdf5.so /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5_hl.so /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5.so -lrt -ldl -lz -lm -lstdc++ -pthread -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -Wl,-rpath -Wl,/RHMC/soft/hdf5/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -Wl,-rpath -Wl,/RHMC/soft/hdf5/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib configure:27693: $? = 0 configure:27710: result: -lnetcdf configure:27725: checking nc-config script configure:27729: checking for nc-config configure:27759: result: no configure:27804: result: Could not find nc-config! go on with default configuration configure:27987: checking for the JASPER library configure:27989: result: suppressed configure:28154: checking for the openjpeg library configure:28156: result: suppressed configure:28321: checking for the LIBPNG library configure:28323: result: suppressed configure:28421: checking grib_api.h usability configure:28421: gcc -std=gnu99 -c -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:28421: $? = 0 configure:28421: result: yes configure:28421: checking grib_api.h presence configure:28421: gcc -std=gnu99 -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:28421: $? = 0 configure:28421: result: yes configure:28421: checking for grib_api.h configure:28421: result: yes configure:28431: checking for library containing grib_get_message configure:28462: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lz -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib /data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/libnetcdf.so -L/RHMC/soft/hdf5/lib -L/RHMC/soft/zlib/lib -L/RHMC/soft/netcdf/lib /RHMC/soft/hdf5/lib/libhdf5_hl.so /RHMC/soft/hdf5/lib/libhdf5.so /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5_hl.so /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5.so -lrt -ldl -lz -lm -lstdc++ -pthread -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -Wl,-rpath -Wl,/RHMC/soft/hdf5/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -Wl,-rpath -Wl,/RHMC/soft/hdf5/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib /tmp/cc0i26KY.o: In function `main': conftest.c:(.text+0xa): undefined reference to `grib_get_message' collect2: ld returned 1 exit status configure:28462: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:28462: ./libtool --mode=link --tag=CC gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lz -lm -lstdc++ >&5 libtool: link: gcc -std=gnu99 -o conftest -fPIC -pthread -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib /data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/libgrib_api.so -L/RHMC/soft/netcdf/lib -lopenjpeg /data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/libnetcdf.so -L/RHMC/soft/hdf5/lib -L/RHMC/soft/zlib/lib /RHMC/soft/hdf5/lib/libhdf5_hl.so /RHMC/soft/hdf5/lib/libhdf5.so /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5_hl.so /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/libhdf5.so -lrt -ldl -lz -lm -lstdc++ -pthread -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -Wl,-rpath -Wl,/RHMC/soft/hdf5/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -Wl,-rpath -Wl,/RHMC/soft/hdf5/lib -Wl,-rpath -Wl,/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib /usr/bin/ld: cannot find -lopenjpeg collect2: ld returned 1 exit status configure:28462: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdi" | #define PACKAGE_TARNAME "cdi" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdi 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" | #define PACKAGE_URL "" | #define CDI "1.7.0" | #define PACKAGE "cdi" | #define VERSION "1.7.0" | #define restrict __restrict | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_MALLOC_H 1 | #define HAVE_EXECINFO_H 1 | #define backtrace_size_t int | #define HAVE_BACKTRACE 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETLINE 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL___BUILTIN_CTZ 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:28479: result: no configure:28488: error: Could not link to grib_api library ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_bigendian=no ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_BUILD_CC_set= ac_cv_env_BUILD_CC_value= ac_cv_env_BUILD_CFLAGS_set= ac_cv_env_BUILD_CFLAGS_value= ac_cv_env_BUILD_CXX_set= ac_cv_env_BUILD_CXX_value= ac_cv_env_BUILD_C_INCLUDE_set= ac_cv_env_BUILD_C_INCLUDE_value= ac_cv_env_BUILD_F77_set= ac_cv_env_BUILD_F77_value= ac_cv_env_BUILD_FCFLAGS_set= ac_cv_env_BUILD_FCFLAGS_value= ac_cv_env_BUILD_FC_INCLUDE_set= ac_cv_env_BUILD_FC_INCLUDE_value= ac_cv_env_BUILD_FC_set= ac_cv_env_BUILD_FC_value= ac_cv_env_BUILD_LDFLAGS_set= ac_cv_env_BUILD_LDFLAGS_value= ac_cv_env_BUILD_LIBS_set= ac_cv_env_BUILD_LIBS_value= ac_cv_env_BUILD_MPI_C_LIB_set= ac_cv_env_BUILD_MPI_C_LIB_value= ac_cv_env_BUILD_MPI_FC_LIB_set= ac_cv_env_BUILD_MPI_FC_LIB_value= ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=-fPIC ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FCMODEXT_set= ac_cv_env_FCMODEXT_value= ac_cv_env_FC_set=set ac_cv_env_FC_value=no ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_FPPFLAGS_set= ac_cv_env_FPPFLAGS_value= ac_cv_env_FPP_set= ac_cv_env_FPP_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib' ac_cv_env_LIBS_set=set ac_cv_env_LIBS_value=-lstdc++ ac_cv_env_MPI_C_INCLUDE_set= ac_cv_env_MPI_C_INCLUDE_value= ac_cv_env_MPI_C_LIB_set= ac_cv_env_MPI_C_LIB_value= ac_cv_env_MPI_FC_INCLUDE_set= ac_cv_env_MPI_FC_INCLUDE_value= ac_cv_env_MPI_FC_LIB_set= ac_cv_env_MPI_FC_LIB_value= ac_cv_env_PKG_CONFIG_LIBDIR_set= ac_cv_env_PKG_CONFIG_LIBDIR_value= ac_cv_env_PKG_CONFIG_PATH_set= ac_cv_env_PKG_CONFIG_PATH_value= ac_cv_env_PKG_CONFIG_set= ac_cv_env_PKG_CONFIG_value= ac_cv_env_PPM_CORE_CFLAGS_set= ac_cv_env_PPM_CORE_CFLAGS_value= ac_cv_env_PPM_CORE_LIBS_set= ac_cv_env_PPM_CORE_LIBS_value= ac_cv_env_YAXT_CFLAGS_set= ac_cv_env_YAXT_CFLAGS_value= ac_cv_env_YAXT_LIBS_set= ac_cv_env_YAXT_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=yes ac_cv_fc_compiler_gnu=no ac_cv_func_getline=yes ac_cv_func_getpagesize=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_uuid_create=no ac_cv_have_decl___builtin_ctz=yes ac_cv_have_decl_isnan=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=yes ac_cv_header_grib_api_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_uuid_h=no ac_cv_header_uuid_uuid_h=no ac_cv_header_zlib_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_lib_uuid_uuid_generate=no ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -std=gnu99 -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_F77=gfortran ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_fc_g=no ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_backtrace='none required' ac_cv_search_deflate=-lz ac_cv_search_grib_get_message=no ac_cv_search_nc_open=-lnetcdf ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no acx_cv_disable_shared=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_PTHREAD_PRIO_INHERIT=no ax_cv_proto_backtrace_type=int lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_F77=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_compiler_static_works_F77=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1966080 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/config/missing aclocal-1.14' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AUTOCONF='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/config/missing autoconf' AUTOHEADER='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/config/missing autoheader' AUTOMAKE='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/config/missing automake-1.14' AWK='gawk' BUILD_CC='' BUILD_CFLAGS='' BUILD_CXX='' BUILD_C_INCLUDE='' BUILD_F77='' BUILD_FC='' BUILD_FCFLAGS='' BUILD_FC_INCLUDE='' BUILD_LDFLAGS='' BUILD_LIBS='' BUILD_MPI_C_LIB='' BUILD_MPI_FC_LIB='' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CDI_F90_INTERFACE_FCFLAGS='' CFLAGS='-fPIC -pthread' CPP='gcc -std=gnu99 -E' CPPFLAGS='-I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include' CREATE_INTERFACES_FALSE='' CREATE_INTERFACES_TRUE='' CREATE_ISOC_FALSE='' CREATE_ISOC_TRUE='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='' ENABLE_EXTRA='' ENABLE_F2003_ISOC='' ENABLE_GRIB='' ENABLE_IEG='' ENABLE_MPI='' ENABLE_NC2='no' ENABLE_NC4='no' ENABLE_NETCDF='yes' ENABLE_NETCDF_FALSE='' ENABLE_NETCDF_TRUE='' ENABLE_PYTHON='' ENABLE_PYTHON_FALSE='' ENABLE_PYTHON_TRUE='' ENABLE_RUBY='' ENABLE_RUBY_FALSE='' ENABLE_RUBY_TRUE='' ENABLE_SERVICE='' ENABLE_SWIG_FALSE='' ENABLE_SWIG_TRUE='' EXEEXT='' F77='gfortran' FC='no' FCFLAGS='' FCFLAGS_f90='' FCMODCASE='' FCMODEXT='' FC_MOD_FLAG='' FFLAGS='-g -O2' FGREP='/bin/grep -F' FPP='' FPPFLAGS='' FPP_DEFOPT='' FPP_INCOPT='' GREP='/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HAVE_LIBGRIB_API_FALSE='' HAVE_LIBGRIB_API_TRUE='' HAVE_PARALLEL_NC4='' HAVE_PARALLEL_NC4_FALSE='' HAVE_PARALLEL_NC4_TRUE='' HDF5_INCLUDE=' -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include' HDF5_LIBS=' -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -lhdf5' HDF5_ROOT='/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib' HOST_NAME='service' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' JASPER_LIBS='' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib' LIBOBJS='' LIBPNG_LIBS='' LIBS='-lnetcdf -lhdf5_hl -lhdf5 -lz -lm -lstdc++' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' MPIROOT='' MPI_C_INCLUDE='' MPI_C_LIB='' MPI_FC_INCLUDE='' MPI_FC_LIB='' MPI_LAUNCH='' NC_CONFIG='' NETCDF_INCLUDE=' -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include' NETCDF_LIBS=' -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -lnetcdf' NETCDF_ROOT='/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENJPEG_LIBS='' OTOOL64='' OTOOL='' PACKAGE='cdi' PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdi' PACKAGE_NAME='cdi' PACKAGE_STRING='cdi 1.7.0' PACKAGE_TARNAME='cdi' PACKAGE_URL='' PACKAGE_VERSION='1.7.0' PATH_SEPARATOR=':' PKG_CONFIG='' PKG_CONFIG_LIBDIR='' PKG_CONFIG_PATH='' PPM_CORE_CFLAGS='' PPM_CORE_LIBS='' PTHREAD_CC='gcc -std=gnu99' PTHREAD_CFLAGS='-pthread' PTHREAD_LIBS='' PYTHON='' RANLIB='ranlib' RUBY='' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SWIG='' SYSTEM_TYPE='x86_64-unknown-linux-gnu' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' USER_NAME='wrf' USE_FC_FALSE='' USE_FC_TRUE='' USE_MPI='' USE_MPI_FALSE='' USE_MPI_TRUE='' USE_PPM_CORE_FALSE='' USE_PPM_CORE_TRUE='' UUID_C_LIB='' VERSION='1.7.0' YAXT_CFLAGS='' YAXT_LIBS='' ZLIB_INCLUDE='' ZLIB_LIBS=' -lz' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' ac_ct_F77='gfortran' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' openjpeg_LIBS='' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdi" #define PACKAGE_TARNAME "cdi" #define PACKAGE_VERSION "1.7.0" #define PACKAGE_STRING "cdi 1.7.0" #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdi" #define PACKAGE_URL "" #define CDI "1.7.0" #define PACKAGE "cdi" #define VERSION "1.7.0" #define restrict __restrict #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_MALLOC_H 1 #define HAVE_EXECINFO_H 1 #define backtrace_size_t int #define HAVE_BACKTRACE 1 #define HAVE_MALLINFO 1 #define HAVE_GETLINE 1 #define HAVE_DECL_ISNAN 1 #define HAVE_DECL___BUILTIN_CTZ 1 #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" #define USER_NAME "wrf" #define HOST_NAME "service" #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" #define HAVE_LIBM 1 #define HAVE_LIBPTHREAD 1 #define HAVE_ZLIB_H 1 #define HAVE_LIBZ 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_GRIB_API_H 1 configure: exit 1