This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.7.0, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --with-netcdf=/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib --with-hdf5=/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib --with-grib_api=/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/ ## --------- ## ## Platform. ## ## --------- ## hostname = service uname -m = x86_64 uname -r = 2.6.32-504.el6.x86_64 uname -s = Linux uname -v = #1 SMP Wed Oct 15 04:27:16 UTC 2014 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/JPEG/jpeg-6b/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/GSL/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/FREETYPE/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/HDF4/hdf-4.2.11-linux-centos6-x86_64-gcc447/bin PATH: /usr/local/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/NCL/bin PATH: /RHMC/soft/netcdf/bin PATH: /opt/intel/composer_xe_2011_sp1.6.233/bin/intel64 PATH: /opt/intel/impi/4.0.3/intel64/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/JPEG/jpeg-6b/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/GSL/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/FREETYPE/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/HDF4/hdf-4.2.11-linux-centos6-x86_64-gcc447/bin PATH: /usr/local/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/NCL/bin PATH: /RHMC/soft/netcdf/bin PATH: /opt/intel/composer_xe_2011_sp1.6.233/bin/intel64 PATH: /opt/intel/impi/4.0.3/intel64/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /opt/ibutils/bin PATH: /usr/sbin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/soft/java/jdk1.8.0_65/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/soft/java/jdk1.8.0_65/jre/bin PATH: /RHMC/users/models/wrf/bin PATH: /usr/sbin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/soft/java/jdk1.8.0_65/bin PATH: /data/RHMC/users/models/wrf/WRFV3.7/data/soft/java/jdk1.8.0_65/jre/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2605: checking build system type configure:2619: result: x86_64-unknown-linux-gnu configure:2639: checking host system type configure:2652: result: x86_64-unknown-linux-gnu configure:2691: checking for a BSD-compatible install configure:2759: result: /usr/bin/install -c configure:2770: checking whether build environment is sane configure:2825: result: yes configure:2976: checking for a thread-safe mkdir -p configure:3015: result: /bin/mkdir -p configure:3022: checking for gawk configure:3038: found /bin/gawk configure:3049: result: gawk configure:3060: checking whether make sets $(MAKE) configure:3082: result: yes configure:3111: checking whether make supports nested variables configure:3128: result: yes configure:3256: checking whether to enable maintainer-specific portions of Makefiles configure:3265: result: no configure:3292: checking for style of include used by make configure:3320: result: GNU configure:3391: checking for gcc configure:3407: found /usr/bin/gcc configure:3418: result: gcc configure:3647: checking for C compiler version configure:3656: gcc --version >&5 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3667: $? = 0 configure:3656: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) configure:3667: $? = 0 configure:3656: gcc -V >&5 gcc: '-V' option must have argument configure:3667: $? = 1 configure:3656: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:3667: $? = 1 configure:3687: checking whether the C compiler works configure:3709: gcc -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:3713: $? = 0 configure:3761: result: yes configure:3764: checking for C compiler default output file name configure:3766: result: a.out configure:3772: checking for suffix of executables configure:3779: gcc -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:3783: $? = 0 configure:3805: result: configure:3827: checking whether we are cross compiling configure:3835: gcc -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:3839: $? = 0 configure:3846: ./conftest configure:3850: $? = 0 configure:3865: result: no configure:3870: checking for suffix of object files configure:3892: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:3896: $? = 0 configure:3917: result: o configure:3921: checking whether we are using the GNU C compiler configure:3940: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:3940: $? = 0 configure:3949: result: yes configure:3958: checking whether gcc accepts -g configure:3978: gcc -c -g -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:3978: $? = 0 configure:4019: result: yes configure:4036: checking for gcc option to accept ISO C89 configure:4100: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:4100: $? = 0 configure:4113: result: none needed configure:4138: checking whether gcc understands -c and -o together configure:4160: gcc -c conftest.c -o conftest2.o configure:4163: $? = 0 configure:4160: gcc -c conftest.c -o conftest2.o configure:4163: $? = 0 configure:4175: result: yes configure:4194: checking dependency style of gcc configure:4305: result: gcc3 configure:4370: checking for ar configure:4386: found /usr/bin/ar configure:4397: result: ar configure:4423: checking the archiver (ar) interface configure:4439: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:4439: $? = 0 configure:4441: ar cru libconftest.a conftest.o >&5 configure:4444: $? = 0 configure:4472: result: ar configure:4493: setting up libtool configure:4541: checking how to print strings configure:4568: result: printf configure:4589: checking for a sed that does not truncate output configure:4653: result: /bin/sed configure:4671: checking for grep that handles long lines and -e configure:4729: result: /bin/grep configure:4734: checking for egrep configure:4796: result: /bin/grep -E configure:4801: checking for fgrep configure:4863: result: /bin/grep -F configure:4898: checking for ld used by gcc configure:4965: result: /usr/bin/ld configure:4972: checking if the linker (/usr/bin/ld) is GNU ld configure:4987: result: yes configure:4999: checking for BSD- or MS-compatible name lister (nm) configure:5048: result: /usr/bin/nm -B configure:5178: checking the name lister (/usr/bin/nm -B) interface configure:5185: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:5188: /usr/bin/nm -B "conftest.o" configure:5191: output 0000000000000000 B some_variable configure:5198: result: BSD nm configure:5201: checking whether ln -s works configure:5205: result: yes configure:5213: checking the maximum length of command line arguments configure:5343: result: 1966080 configure:5360: checking whether the shell understands some XSI constructs configure:5370: result: yes configure:5374: checking whether the shell understands "+=" configure:5380: result: yes configure:5415: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format configure:5455: result: func_convert_file_noop configure:5462: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format configure:5482: result: func_convert_file_noop configure:5489: checking for /usr/bin/ld option to reload object files configure:5496: result: -r configure:5570: checking for objdump configure:5586: found /usr/bin/objdump configure:5597: result: objdump configure:5629: checking how to recognize dependent libraries configure:5831: result: pass_all configure:5916: checking for dlltool configure:5946: result: no configure:5976: checking how to associate runtime and link libraries configure:6003: result: printf %s\n configure:6127: checking for archiver @FILE support configure:6144: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:6144: $? = 0 configure:6147: ar cru libconftest.a @conftest.lst >&5 configure:6150: $? = 0 configure:6155: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:6158: $? = 1 configure:6170: result: @ configure:6228: checking for strip configure:6244: found /usr/bin/strip configure:6255: result: strip configure:6327: checking for ranlib configure:6343: found /usr/bin/ranlib configure:6354: result: ranlib configure:6456: checking command to parse /usr/bin/nm -B output from gcc object configure:6576: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:6579: $? = 0 configure:6583: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6586: $? = 0 configure:6652: gcc -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c conftstm.o >&5 configure:6655: $? = 0 configure:6693: result: ok configure:6730: checking for sysroot configure:6760: result: no configure:6837: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:6840: $? = 0 configure:7016: checking for mt configure:7046: result: no configure:7066: checking if : is a manifest tool configure:7072: : '-?' configure:7080: result: no configure:7722: checking how to run the C preprocessor configure:7753: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:7753: $? = 0 configure:7767: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c conftest.c:12:28: error: ac_nonexistent.h: No such file or directory configure:7767: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | /* end confdefs.h. */ | #include configure:7792: result: gcc -E configure:7812: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:7812: $? = 0 configure:7826: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c conftest.c:12:28: error: ac_nonexistent.h: No such file or directory configure:7826: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | /* end confdefs.h. */ | #include configure:7855: checking for ANSI C header files configure:7875: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7875: $? = 0 configure:7948: gcc -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:7948: $? = 0 configure:7948: ./conftest configure:7948: $? = 0 configure:7959: result: yes configure:7972: checking for sys/types.h configure:7972: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7972: $? = 0 configure:7972: result: yes configure:7972: checking for sys/stat.h configure:7972: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7972: $? = 0 configure:7972: result: yes configure:7972: checking for stdlib.h configure:7972: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7972: $? = 0 configure:7972: result: yes configure:7972: checking for string.h configure:7972: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7972: $? = 0 configure:7972: result: yes configure:7972: checking for memory.h configure:7972: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7972: $? = 0 configure:7972: result: yes configure:7972: checking for strings.h configure:7972: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7972: $? = 0 configure:7972: result: yes configure:7972: checking for inttypes.h configure:7972: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7972: $? = 0 configure:7972: result: yes configure:7972: checking for stdint.h configure:7972: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7972: $? = 0 configure:7972: result: yes configure:7972: checking for unistd.h configure:7972: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7972: $? = 0 configure:7972: result: yes configure:7986: checking for dlfcn.h configure:7986: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:7986: $? = 0 configure:7986: result: yes configure:8192: checking for objdir configure:8207: result: .libs configure:8478: checking if gcc supports -fno-rtti -fno-exceptions configure:8496: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:8500: $? = 0 configure:8513: result: no configure:8840: checking for gcc option to produce PIC configure:8847: result: -fPIC -DPIC configure:8855: checking if gcc PIC flag -fPIC -DPIC works configure:8873: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -fPIC -DPIC -DPIC conftest.c >&5 configure:8877: $? = 0 configure:8890: result: yes configure:8919: checking if gcc static flag -static works configure:8947: result: no configure:8962: checking if gcc supports -c -o file.o configure:8983: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -o out/conftest2.o conftest.c >&5 configure:8987: $? = 0 configure:9009: result: yes configure:9017: checking if gcc supports -c -o file.o configure:9064: result: yes configure:9097: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10250: result: yes configure:10287: checking whether -lc should be explicitly linked in configure:10295: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:10298: $? = 0 configure:10313: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:10316: $? = 0 configure:10330: result: no configure:10490: checking dynamic linker characteristics configure:11001: gcc -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib -Wl,-rpath -Wl,/foo conftest.c -lstdc++ >&5 configure:11001: $? = 0 configure:11223: result: GNU/Linux ld.so configure:11330: checking how to hardcode library paths into programs configure:11355: result: immediate configure:11895: checking whether stripping libraries is possible configure:11900: result: yes configure:11935: checking if libtool supports shared libraries configure:11937: result: yes configure:11940: checking whether to build shared libraries configure:11961: result: yes configure:11964: checking whether to build static libraries configure:11968: result: yes configure:12050: checking for gcc configure:12077: result: gcc configure:12142: checking for g++ configure:12158: found /usr/bin/g++ configure:12169: result: g++ configure:12191: checking for gcc option to accept ISO C99 configure:12340: gcc -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 conftest.c:74: error: expected ';', ',' or ')' before 'text' conftest.c: In function 'main': conftest.c:128: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' conftest.c:128: error: 'newvar' undeclared (first use in this function) conftest.c:128: error: (Each undeclared identifier is reported only once conftest.c:128: error: for each function it appears in.) conftest.c:138: error: 'for' loop initial declarations are only allowed in C99 mode conftest.c:138: note: use option -std=c99 or -std=gnu99 to compile your code configure:12340: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:12340: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:12340: $? = 0 configure:12360: result: -std=gnu99 configure:12369: checking for C/C++ restrict keyword configure:12394: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:12394: $? = 0 configure:12402: result: __restrict configure:12423: checking for gcc -std=gnu99 option to support OpenMP configure:12438: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 conftest.c:27: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me' In file included from conftest.c:29: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:76: error: expected ')' before '*' token /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:77: error: expected ')' before '*' token /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:78: error: expected ')' before '*' token /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:79: error: expected ')' before '*' token /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/omp.h:80: error: expected ')' before '*' token configure:12438: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:12455: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:12455: $? = 0 configure:12469: result: -fopenmp configure:12523: checking for ar configure:12550: result: ar configure:12707: checking for ld configure:12734: result: /usr/bin/ld -m elf_x86_64 configure:12799: checking for nm configure:12826: result: /usr/bin/nm -B configure:12891: checking for ar configure:12918: result: ar configure:12983: checking for as configure:12999: found /usr/bin/as configure:13010: result: as configure:13075: checking for dlltool configure:13102: result: false configure:13167: checking for objdump configure:13194: result: objdump configure:13259: checking for strip configure:13286: result: strip configure:13351: checking for ranlib configure:13378: result: ranlib configure:13513: checking for C++ compiler version configure:13522: g++ --version >&5 g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:13533: $? = 0 configure:13522: g++ -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) configure:13533: $? = 0 configure:13522: g++ -V >&5 g++: '-V' option must have argument configure:13533: $? = 1 configure:13522: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:13533: $? = 1 configure:13537: checking whether we are using the GNU C++ compiler configure:13556: g++ -c -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp >&5 configure:13556: $? = 0 configure:13565: result: yes configure:13574: checking whether g++ accepts -g configure:13594: g++ -c -g -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp >&5 configure:13594: $? = 0 configure:13635: result: yes configure:13660: checking dependency style of g++ configure:13771: result: gcc3 configure:13804: checking how to run the C++ preprocessor configure:13831: g++ -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp configure:13831: $? = 0 configure:13845: g++ -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory configure:13845: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | #include configure:13870: result: g++ -E configure:13890: g++ -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp configure:13890: $? = 0 configure:13904: g++ -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp conftest.cpp:25:28: error: ac_nonexistent.h: No such file or directory configure:13904: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | #include configure:14073: checking for ld used by g++ configure:14140: result: /usr/bin/ld -m elf_x86_64 configure:14147: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:14162: result: yes configure:14217: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:15222: result: yes configure:15258: g++ -c -g -O2 -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.cpp >&5 configure:15261: $? = 0 configure:15781: checking for g++ option to produce PIC configure:15788: result: -fPIC -DPIC configure:15796: checking if g++ PIC flag -fPIC -DPIC works configure:15814: g++ -c -g -O2 -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -fPIC -DPIC -DPIC conftest.cpp >&5 configure:15818: $? = 0 configure:15831: result: yes configure:15854: checking if g++ static flag -static works configure:15882: result: no configure:15894: checking if g++ supports -c -o file.o configure:15915: g++ -c -g -O2 -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -o out/conftest2.o conftest.cpp >&5 configure:15919: $? = 0 configure:15941: result: yes configure:15946: checking if g++ supports -c -o file.o configure:15993: result: yes configure:16023: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:16059: result: yes configure:16200: checking dynamic linker characteristics configure:16867: result: GNU/Linux ld.so configure:16920: checking how to hardcode library paths into programs configure:16945: result: immediate configure:16997: checking for special C compiler options needed for large files configure:17042: result: no configure:17048: checking for _FILE_OFFSET_BITS value needed for large files configure:17073: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:17073: $? = 0 configure:17105: result: no configure:17196: checking for stdlib.h configure:17196: result: yes configure:17196: checking for unistd.h configure:17196: result: yes configure:17196: checking for sys/param.h configure:17196: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:17196: $? = 0 configure:17196: result: yes configure:17216: checking for getpagesize configure:17216: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:17216: $? = 0 configure:17216: result: yes configure:17225: checking for working mmap configure:17372: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:17372: $? = 0 configure:17372: ./conftest configure:17372: $? = 0 configure:17382: result: yes configure:17393: checking for malloc in -lmalloc configure:17418: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lmalloc -lstdc++ >&5 conftest.c:37: warning: conflicting types for built-in function 'malloc' /usr/bin/ld: cannot find -lmalloc collect2: ld returned 1 exit status configure:17418: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:17427: result: no configure:17440: checking for struct stat.st_blksize configure:17440: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:17440: $? = 0 configure:17440: result: yes configure:17454: checking sys/resource.h usability configure:17454: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:17454: $? = 0 configure:17454: result: yes configure:17454: checking sys/resource.h presence configure:17454: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:17454: $? = 0 configure:17454: result: yes configure:17454: checking for sys/resource.h configure:17454: result: yes configure:17466: checking sys/times.h usability configure:17466: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:17466: $? = 0 configure:17466: result: yes configure:17466: checking sys/times.h presence configure:17466: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:17466: $? = 0 configure:17466: result: yes configure:17466: checking for sys/times.h configure:17466: result: yes configure:17478: checking malloc.h usability configure:17478: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:17478: $? = 0 configure:17478: result: yes configure:17478: checking malloc.h presence configure:17478: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:17478: $? = 0 configure:17478: result: yes configure:17478: checking for malloc.h configure:17478: result: yes configure:17490: checking glob.h usability configure:17490: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:17490: $? = 0 configure:17490: result: yes configure:17490: checking glob.h presence configure:17490: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:17490: $? = 0 configure:17490: result: yes configure:17490: checking for glob.h configure:17490: result: yes configure:17502: checking fnmatch.h usability configure:17502: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:17502: $? = 0 configure:17502: result: yes configure:17502: checking fnmatch.h presence configure:17502: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:17502: $? = 0 configure:17502: result: yes configure:17502: checking for fnmatch.h configure:17502: result: yes configure:17514: checking wordexp.h usability configure:17514: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:17514: $? = 0 configure:17514: result: yes configure:17514: checking wordexp.h presence configure:17514: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:17514: $? = 0 configure:17514: result: yes configure:17514: checking for wordexp.h configure:17514: result: yes configure:17528: checking for mallinfo configure:17528: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:17528: $? = 0 configure:17528: result: yes configure:17541: checking for getrlimit configure:17541: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:17541: $? = 0 configure:17541: result: yes configure:17552: checking for gethostname configure:17552: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lstdc++ >&5 configure:17552: $? = 0 configure:17552: result: yes configure:17620: checking for floor in -lm configure:17645: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 conftest.c:51: warning: conflicting types for built-in function 'floor' configure:17645: $? = 0 configure:17654: result: yes configure:17667: checking whether isnan is declared configure:17667: gcc -std=gnu99 -c -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:17667: $? = 0 configure:17667: result: yes configure:17682: checking for sqrtl configure:17682: gcc -std=gnu99 -o conftest -fPIC -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 conftest.c:69: warning: conflicting types for built-in function 'sqrtl' configure:17682: $? = 0 configure:17682: result: yes configure:17703: checking for DATA support configure:17717: result: configure:17860: checking if compiler needs -Werror to reject unknown flags configure:17876: gcc -std=gnu99 -c -fPIC -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 cc1: error: unrecognized command line option "-Wunknown-warning-option" cc1: error: unrecognized command line option "-Wsizeof-array-argument" configure:17876: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | int foo(void); | int | main () | { | foo() | ; | return 0; | } configure:17881: result: no configure:17947: checking for the pthreads library -lpthreads configure:17985: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lpthreads -lm -lstdc++ >&5 /usr/bin/ld: cannot find -lpthreads collect2: ld returned 1 exit status configure:17985: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:17994: result: no configure:17892: checking whether pthreads work without any flags configure:17985: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 configure:17985: $? = 0 configure:17994: result: yes configure:18013: checking for joinable pthread attribute configure:18028: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 configure:18028: $? = 0 configure:18034: result: PTHREAD_CREATE_JOINABLE configure:18044: checking if more special flags are required for pthreads configure:18059: result: no configure:18065: checking for PTHREAD_PRIO_INHERIT configure:18082: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 conftest.c: In function 'main': conftest.c:52: error: 'PTHREAD_PRIO_INHERIT' undeclared (first use in this function) conftest.c:52: error: (Each undeclared identifier is reported only once conftest.c:52: error: for each function it appears in.) configure:18082: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | #include | int | main () | { | int i = PTHREAD_PRIO_INHERIT; | ; | return 0; | } configure:18091: result: no configure:18429: checking zlib.h usability configure:18429: gcc -std=gnu99 -c -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:18429: $? = 0 configure:18429: result: yes configure:18429: checking zlib.h presence configure:18429: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:18429: $? = 0 configure:18429: result: yes configure:18429: checking for zlib.h configure:18429: result: yes configure:18439: checking for library containing deflate configure:18470: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lm -lstdc++ >&5 /tmp/ccOdXxHq.o: In function `main': conftest.c:(.text+0xa): undefined reference to `deflate' collect2: ld returned 1 exit status configure:18470: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:18470: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lz -lm -lstdc++ >&5 configure:18470: $? = 0 configure:18487: result: -lz configure:18677: checking for szlib library configure:18679: result: suppressed configure:18845: checking hdf5.h usability configure:18845: gcc -std=gnu99 -c -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:18845: $? = 0 configure:18845: result: yes configure:18845: checking hdf5.h presence configure:18845: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:18845: $? = 0 configure:18845: result: yes configure:18845: checking for hdf5.h configure:18845: result: yes configure:18855: checking for library containing H5Fopen configure:18886: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lz -lm -lstdc++ >&5 /tmp/ccvNvmHP.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5Fopen' collect2: ld returned 1 exit status configure:18886: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:18886: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lhdf5 -lz -lm -lstdc++ >&5 configure:18886: $? = 0 configure:18903: result: -lhdf5 configure:18915: checking for library containing H5DSis_scale configure:18946: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lhdf5 -lz -lm -lstdc++ >&5 /tmp/ccwIFVd8.o: In function `main': conftest.c:(.text+0xa): undefined reference to `H5DSis_scale' collect2: ld returned 1 exit status configure:18946: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:18946: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lhdf5_hl -lhdf5 -lz -lm -lstdc++ >&5 configure:18946: $? = 0 configure:18963: result: -lhdf5_hl configure:19185: checking netcdf.h usability configure:19185: gcc -std=gnu99 -c -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:19185: $? = 0 configure:19185: result: yes configure:19185: checking netcdf.h presence configure:19185: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:19185: $? = 0 configure:19185: result: yes configure:19185: checking for netcdf.h configure:19185: result: yes configure:19195: checking for library containing nc_open configure:19226: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lhdf5_hl -lhdf5 -lz -lm -lstdc++ >&5 /tmp/ccWCPTUA.o: In function `main': conftest.c:(.text+0xa): undefined reference to `nc_open' collect2: ld returned 1 exit status configure:19226: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:19226: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lz -lm -lstdc++ >&5 configure:19226: $? = 0 configure:19243: result: -lnetcdf configure:19259: checking nc-config script configure:19263: checking for nc-config configure:19293: result: no configure:19351: result: Could not find nc-config! go on with default configuration configure:19597: checking for the CMOR library configure:19599: result: suppressed configure:19699: checking grib_api.h usability configure:19699: gcc -std=gnu99 -c -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:19699: $? = 0 configure:19699: result: yes configure:19699: checking grib_api.h presence configure:19699: gcc -E -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c configure:19699: $? = 0 configure:19699: result: yes configure:19699: checking for grib_api.h configure:19699: result: yes configure:19709: checking for library containing grib_get_message configure:19740: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lz -lm -lstdc++ >&5 /tmp/ccRHAoHX.o: In function `main': conftest.c:(.text+0xa): undefined reference to `grib_get_message' collect2: ld returned 1 exit status configure:19740: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:19740: gcc -std=gnu99 -o conftest -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib conftest.c -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lz -lm -lstdc++ >&5 configure:19740: $? = 0 configure:19757: result: -lgrib_api configure:19790: checking for GRIB support configure:19807: result: yes configure:19813: checking for CGRIBEX support configure:19830: result: yes configure:19836: checking for SERVICE support configure:19853: result: yes configure:19859: checking for EXTRA support configure:19876: result: yes configure:19882: checking for IEG support configure:19899: result: yes configure:19905: checking for FFTW3 support configure:20168: checking for the PROJ library configure:20170: result: suppressed configure:20350: checking for the CURL library configure:20352: result: suppressed configure:20544: checking for the UDUNITS2 library configure:20546: result: suppressed configure:20726: checking for MAGICS library configure:20728: result: suppressed configure:20931: checking for XML2 library configure:20933: result: suppressed configure:20952: checking for build a separate CDI library and link CDO to it configure:20969: result: no configure:20993: checking for building an additional static CDO binary configure:21006: result: no configure:21025: checking if x86/amd64 assembler speaks SSE4.2 configure:21048: gcc -std=gnu99 -c -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:21048: $? = 0 configure:21051: result: yes configure:21076: checking if x86/amd64 assembler speaks AVX configure:21097: gcc -std=gnu99 -c -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 configure:21097: $? = 0 configure:21100: result: yes configure:21125: checking if x86/amd64 assembler speaks AVX2 configure:21146: gcc -std=gnu99 -c -fPIC -fopenmp -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include conftest.c >&5 conftest.c: Assembler messages: conftest.c:68: Error: no such instruction: `vpsravd (%rsp),%ymm8,%ymm7' conftest.c:70: Error: suffix or operands invalid for `vpaddb' configure:21146: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.7.0" | #define PACKAGE_STRING "cdo 1.7.0" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.7.0" | #define PACKAGE "cdo" | #define VERSION "1.7.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)" | #define USER_NAME "wrf" | #define HOST_NAME "service" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | /* end confdefs.h. */ | | int | main () | { | | do { long long int x; | __asm__ __volatile__( | "vpsravd (%%rsp), %%ymm8, %%ymm7" : : : "xmm7", "xmm8" ); | __asm__ __volatile__( | "vpaddb %%ymm6,%%ymm7,%%ymm8" : : : "xmm6","xmm7","xmm8"); } | while (0) | | ; | return 0; | } configure:21155: result: no configure:21192: checking for gawk configure:21219: result: gawk configure:21354: checking that generated files are newer than configure configure:21360: result: done configure:21415: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by cdo config.status 1.7.0, which was generated by GNU Autoconf 2.68. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on service config.status:1296: creating test/File.test config.status:1296: creating test/Read_grib.test config.status:1296: creating test/Read_netcdf.test config.status:1296: creating test/Copy_netcdf.test config.status:1296: creating test/Cat.test config.status:1296: creating test/Gridarea.test config.status:1296: creating test/Genweights.test config.status:1296: creating test/Remap.test config.status:1296: creating test/Select.test config.status:1296: creating test/Spectral.test config.status:1296: creating test/Timstat.test config.status:1296: creating test/Vertint.test config.status:1296: creating test/Ymonstat.test config.status:1296: creating test/Fldstat.test config.status:1296: creating test/Fldpctl.test config.status:1296: creating test/Ensstat.test config.status:1296: creating test/Enspctl.test config.status:1296: creating test/Afterburner.test config.status:1296: creating test/Detrend.test config.status:1296: creating test/Arith.test config.status:1296: creating test/Gradsdes.test config.status:1296: creating test/wildcard.test config.status:1296: creating Makefile config.status:1296: creating src/Makefile config.status:1296: creating contrib/Makefile config.status:1296: creating test/Makefile config.status:1296: creating test/data/Makefile config.status:1296: creating cdo.spec config.status:1296: creating cdo.settings config.status:1296: creating src/config.h config.status:1477: src/config.h is unchanged config.status:1525: executing depfiles commands config.status:1525: executing libtool commands configure:24032: === configuring in libcdi (/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi) configure:24095: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' '--with-netcdf=/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib' '--with-hdf5=/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib' '--with-grib_api=/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/' 'CFLAGS=-fPIC' 'LDFLAGS=-L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib' 'LIBS=-lstdc++' 'CPPFLAGS=-I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include' --cache-file=/dev/null --srcdir=. configure:24100: error: ./configure failed for libcdi ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=-fPIC ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib' ac_cv_env_LIBS_set=set ac_cv_env_LIBS_value=-lstdc++ ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_sqrtl=yes ac_cv_have_decl_isnan=yes ac_cv_header_dlfcn_h=yes ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_grib_api_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_wordexp_h=yes ac_cv_header_zlib_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_deflate=-lz ac_cv_search_grib_get_message=-lgrib_api ac_cv_search_nc_open=-lnetcdf ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_PTHREAD_PRIO_INHERIT=no lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1966080 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/config/missing aclocal-1.14' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/config/missing autoconf' AUTOHEADER='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/config/missing autoheader' AUTOMAKE='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/config/missing automake-1.14' AWK='gawk' BUILD_AVX2_TESTS_FALSE='' BUILD_AVX2_TESTS_TRUE='#' BUILD_AVX_TESTS_FALSE='#' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='#' BUILD_SSE42_TESTS_TRUE='' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-fPIC -fopenmp ' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='gcc -E' CPPFLAGS='-I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/include/ -I/RHMC/soft/jasper/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/include -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/include -I/usr/local/include/openjpeg-2.1 -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/include' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='#' ENABLE_CDI_LIB='false' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='#' ENABLE_CGRIBEX='yes' ENABLE_DATA='' ENABLE_EXTRA='yes' ENABLE_GRIB='yes' ENABLE_GRIBAPI='yes' ENABLE_IEG='yes' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='#' ENABLE_NC2='no' ENABLE_NC4='no' ENABLE_NC4HDF5='no' ENABLE_NETCDF='yes' ENABLE_SERVICE='yes' EXEEXT='' FCFLAGS='' FGREP='/bin/grep -F' GREP='/bin/grep' GRIB_API_INCLUDE=' -I/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//include' GRIB_API_LIBS=' -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//lib -lgrib_api' HDF5_INCLUDE=' -I/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/include' HDF5_LIBS=' -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -lhdf5' HDF5_ROOT='/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib' HOST_NAME='service' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API//lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/GRIB/GRIB_API/lib/ -L/RHMC/soft/jasper/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/libs4cdo-0.0.11/hdf5-1.8.15/lib -L/usr/local/lib/openjpeg-2.1 -L/data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/libcdi/lib' LIBOBJS='' LIBS='-lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lz -lm -lstdc++' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' NC_CONFIG='' NETCDF_INCLUDE=' -I/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/include' NETCDF_LIBS=' -L/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib/lib -lnetcdf' NETCDF_ROOT='/data/RHMC/users/models/wrf/WRFV3.7/data/NETCDF/lib' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.7.0' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.7.0' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc -std=gnu99' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-unknown-linux-gnu' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USER_NAME='wrf' VERSION='1.7.0' XML2_LIBS='' ZLIB_INCLUDE='' ZLIB_LIBS=' -lz' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /data/RHMC/users/models/wrf/WRFV3.7/data/cdo/cdo-1.7.0/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' libcdi' sysconfdir='${prefix}/etc' target_alias='' configure: exit 1