CDO

This file contains any messages produced by compilers while

running configure, to aid debugging if configure makes a mistake.

It was created by netCDF configure 4.2, which was

generated by GNU Autoconf 2.68. Invocation command line was

$ ./configure --prefix=/home/daniel/libs4cdo-0.0.10/build --with-pic

## --------- ##

## Platform. ##

## --------- ##

hostname = ubuntu

uname -m = x86_64

uname -r = 3.2.0-24-generic

uname -s = Linux

uname -v = #39-Ubuntu SMP Mon May 21 16:52:17 UTC 2012

/usr/bin/uname -p = unknown

/bin/uname -X = unknown

/bin/arch = unknown

/usr/bin/arch -k = unknown

/usr/convex/getsysinfo = unknown

/usr/bin/hostinfo = unknown

/bin/machine = unknown

/usr/bin/oslevel = unknown

/bin/universe = unknown

PATH: /home/daniel/bin

PATH: /usr/lib/lightdm/lightdm

PATH: /usr/local/sbin

PATH: /usr/local/bin

PATH: /usr/sbin

PATH: /usr/bin

PATH: /sbin

PATH: /bin

PATH: /usr/games

## ----------- ##

## Core tests. ##

## ----------- ##

configure:2716: netCDF 4.2

configure:2756: checking build system type

configure:2770: result: x86_64-unknown-linux-gnu

configure:2790: checking host system type

configure:2803: result: x86_64-unknown-linux-gnu

configure:2825: checking target system type

configure:2838: result: x86_64-unknown-linux-gnu

configure:2885: checking for a BSD-compatible install

configure:2953: result: /usr/bin/install -c

configure:2964: checking whether build environment is sane

configure:3014: result: yes

configure:3155: checking for a thread-safe mkdir -p

configure:3194: result: /bin/mkdir -p

configure:3207: checking for gawk

configure:3237: result: no

configure:3207: checking for mawk

configure:3223: found /usr/bin/mawk

configure:3234: result: mawk

configure:3245: checking whether make sets $(MAKE)

configure:3267: result: yes

configure:3351: checking user options

configure:3355: checking whether a NCIO_MINBLOCKSIZE was specified

configure:3365: result: 256

configure:3396: checking if fsync support is enabled

configure:3404: result: yes

configure:3413: checking whether extra valgrind tests should be run

configure:3421: result: no

configure:3425: checking whether we should try to build netCDF-4

configure:3433: result: yes

configure:3448: checking whether reading of HDF4 SD files is to be enabled

configure:3456: result: no

configure:3460: checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)

configure:3473: result: no

configure:3477: checking whether parallel I/O for classic and 64-bit offset files using parallel-netcdf is to be enabled

configure:3485: result: no

configure:3489: checking whether extra example tests should be run

configure:3497: result: no

configure:3501: checking whether parallel IO tests should be run

configure:3509: result: no

configure:3513: checking whether a default chunk size in bytes was specified

configure:3523: result: 4194304

configure:3532: checking whether a maximum per-variable cache size for HDF5 was specified

configure:3542: result: 67108864

configure:3551: checking whether a number of chunks for the default per-variable cache was specified

configure:3561: result: 10

configure:3570: checking whether a default file cache size for HDF5 was specified

configure:3580: result: 4194304

configure:3589: checking whether a default file cache maximum number of elements for HDF5 was specified

configure:3599: result: 1009

configure:3608: checking whether a default cache preemption for HDF5 was specified

configure:3618: result: 0.75

configure:3627: checking whether netCDF-4 logging is enabled

configure:3635: result: no

configure:3639: checking whether cdmremote client is to be built

configure:3649: result: no

configure:3653: checking whether DAP client is to be built

configure:3661: result: yes

configure:3698: checking for style of include used by make

configure:3726: result: GNU

configure:3796: checking for gcc

configure:3812: found /usr/bin/gcc

configure:3823: result: gcc

configure:4052: checking for C compiler version

configure:4061: gcc --version >&5

gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3

Copyright (C) 2011 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4072: $? = 0

configure:4061: gcc -v >&5

Using built-in specs.

COLLECT_GCC=gcc

COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper

Target: x86_64-linux-gnu

Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu

Thread model: posix

gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)

configure:4072: $? = 0

configure:4061: gcc -V >&5

gcc: error: unrecognized option '-V'

gcc: fatal error: no input files

compilation terminated.

configure:4072: $? = 4

configure:4061: gcc -qversion >&5

gcc: error: unrecognized option '-qversion'

gcc: fatal error: no input files

compilation terminated.

configure:4072: $? = 4

configure:4092: checking whether the C compiler works

configure:4114: gcc conftest.c >&5

configure:4118: $? = 0

configure:4166: result: yes

configure:4169: checking for C compiler default output file name

configure:4171: result: a.out

configure:4177: checking for suffix of executables

configure:4184: gcc -o conftest conftest.c >&5

configure:4188: $? = 0

configure:4210: result:

configure:4232: checking whether we are cross compiling

configure:4240: gcc -o conftest conftest.c >&5

configure:4244: $? = 0

configure:4251: ./conftest

configure:4255: $? = 0

configure:4270: result: no

configure:4275: checking for suffix of object files

configure:4297: gcc -c conftest.c >&5

configure:4301: $? = 0

configure:4322: result: o

configure:4326: checking whether we are using the GNU C compiler

configure:4345: gcc -c conftest.c >&5

configure:4345: $? = 0

configure:4354: result: yes

configure:4363: checking whether gcc accepts -g

configure:4383: gcc -c -g conftest.c >&5

configure:4383: $? = 0

configure:4424: result: yes

configure:4441: checking for gcc option to accept ISO C89

configure:4505: gcc -c -g -O2 conftest.c >&5

configure:4505: $? = 0

configure:4518: result: none needed

configure:4540: checking dependency style of gcc

configure:4650: result: gcc3

configure:4666: checking for curl_easy_setopt in -lcurl

configure:4691: gcc -o conftest -g -O2 conftest.c -lcurl >&5

/usr/bin/ld: cannot find -lcurl

collect2: ld returned 1 exit status

configure:4691: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| /* end confdefs.h. */

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char curl_easy_setopt ();

| int

| main ()

| {

| return curl_easy_setopt ();

| ;

| return 0;

| }

configure:4700: result: no

configure:4711: libcurl not found; disabling remote protocol(s) support

configure:4769: checking whether dap remote testing should be enabled (default on)

configure:4780: result: no

configure:4784: checking whether netcdf4 group names should be enabled (default on)

configure:4793: dap groups disabled because dap disabled or netcdf-4 disabled

configure:4797: result: no

configure:4833: checking whether the time-consuming dap tests should be enabled (default off)

configure:4844: result: no

configure:4857: checking whether netCDF extra tests should be run (developers only)

configure:4865: result: no

configure:4882: checking whether FFIO will be used

configure:4890: result: no

configure:4927: checking whether examples should be built

configure:4935: result: yes

configure:4947: checking whether v2 netCDF API should be built

configure:4955: result: yes

configure:4974: checking whether the ncgen/ncdump/nccopy should be built

configure:4983: result: yes

configure:4995: checking whether large file (> 2GB) tests should be run

configure:5003: result: no

configure:5020: checking whether benchmaks should be run (experimental)

configure:5028: result: no

configure:5040: checking whether extreme numbers should be used in tests

configure:5055: result: yes

configure:5067: checking where to put large temp files if large file tests are run

configure:5076: result: .

configure:5087: checking whether a win32 DLL is desired

configure:5095: result: no

configure:5117: finding C compiler

configure:5168: checking for gcc

configure:5195: result: gcc

configure:5424: checking for C compiler version

configure:5433: gcc --version >&5

gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3

Copyright (C) 2011 Free Software Foundation, Inc.

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:5444: $? = 0

configure:5433: gcc -v >&5

Using built-in specs.

COLLECT_GCC=gcc

COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper

Target: x86_64-linux-gnu

Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu

Thread model: posix

gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)

configure:5444: $? = 0

configure:5433: gcc -V >&5

gcc: error: unrecognized option '-V'

gcc: fatal error: no input files

compilation terminated.

configure:5444: $? = 4

configure:5433: gcc -qversion >&5

gcc: error: unrecognized option '-qversion'

gcc: fatal error: no input files

compilation terminated.

configure:5444: $? = 4

configure:5448: checking whether we are using the GNU C compiler

configure:5476: result: yes

configure:5485: checking whether gcc accepts -g

configure:5546: result: yes

configure:5563: checking for gcc option to accept ISO C89

configure:5640: result: none needed

configure:5662: checking dependency style of gcc

configure:5772: result: gcc3

configure:5788: checking whether gcc and cc understand -c and -o together

configure:5819: gcc -c conftest.c -o conftest2.o >&5

configure:5823: $? = 0

configure:5829: gcc -c conftest.c -o conftest2.o >&5

configure:5833: $? = 0

configure:5844: cc -c conftest.c >&5

configure:5848: $? = 0

configure:5856: cc -c conftest.c -o conftest2.o >&5

configure:5860: $? = 0

configure:5866: cc -c conftest.c -o conftest2.o >&5

configure:5870: $? = 0

configure:5888: result: yes

configure:5913: checking for an ANSI C-conforming const

configure:5978: gcc -c -g -O2 conftest.c >&5

configure:5978: $? = 0

configure:5985: result: yes

configure:6010: gcc -c conftest.c >&5

conftest.c:21:23: fatal error: curl/curl.h: No such file or directory

compilation terminated.

configure:6010: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| #define USE_EXTREME_NUMBERS 1

| #define TEMP_LARGE "."

| /* end confdefs.h. */

| #include "curl/curl.h"

| int

| main ()

| {

| int x = CURLOPT_KEYPASSWD;

| ;

| return 0;

| }

configure:6016: checking whether a CURLOPT_KEYPASSWD is defined

configure:6018: result: no

configure:6028: setting up libtool

configure:6077: checking how to print strings

configure:6104: result: printf

configure:6125: checking for a sed that does not truncate output

configure:6189: result: /bin/sed

configure:6207: checking for grep that handles long lines and -e

configure:6265: result: /bin/grep

configure:6270: checking for egrep

configure:6332: result: /bin/grep -E

configure:6337: checking for fgrep

configure:6399: result: /bin/grep -F

configure:6434: checking for ld used by gcc

configure:6501: result: /usr/bin/ld

configure:6508: checking if the linker (/usr/bin/ld) is GNU ld

configure:6523: result: yes

configure:6535: checking for BSD- or MS-compatible name lister (nm)

configure:6584: result: /usr/bin/nm -B

configure:6714: checking the name lister (/usr/bin/nm -B) interface

configure:6721: gcc -c -g -O2 conftest.c >&5

configure:6724: /usr/bin/nm -B "conftest.o"

configure:6727: output

0000000000000000 B some_variable

configure:6734: result: BSD nm

configure:6737: checking whether ln -s works

configure:6741: result: yes

configure:6749: checking the maximum length of command line arguments

configure:6874: result: 3458764513820540925

configure:6891: checking whether the shell understands some XSI constructs

configure:6901: result: yes

configure:6905: checking whether the shell understands "+="

configure:6911: result: yes

configure:6946: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format

configure:6986: result: func_convert_file_noop

configure:6993: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format

configure:7013: result: func_convert_file_noop

configure:7020: checking for /usr/bin/ld option to reload object files

configure:7027: result: -r

configure:7101: checking for objdump

configure:7117: found /usr/bin/objdump

configure:7128: result: objdump

configure:7157: checking how to recognize dependent libraries

configure:7359: result: pass_all

configure:7444: checking for dlltool

configure:7474: result: no

configure:7501: checking how to associate runtime and link libraries

configure:7528: result: printf %s\n

configure:7588: checking for ar

configure:7604: found /usr/bin/ar

configure:7615: result: ar

configure:7652: checking for archiver @FILE support

configure:7669: gcc -c -g -O2 conftest.c >&5

configure:7669: $? = 0

configure:7672: ar cru libconftest.a @conftest.lst >&5

configure:7675: $? = 0

configure:7680: ar cru libconftest.a @conftest.lst >&5

ar: conftest.o: No such file or directory

configure:7683: $? = 1

configure:7695: result: @

configure:7753: checking for strip

configure:7769: found /usr/bin/strip

configure:7780: result: strip

configure:7852: checking for ranlib

configure:7868: found /usr/bin/ranlib

configure:7879: result: ranlib

configure:7981: checking command to parse /usr/bin/nm -B output from gcc object

configure:8100: gcc -c -g -O2 conftest.c >&5

configure:8103: $? = 0

configure:8107: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm

configure:8110: $? = 0

configure:8176: gcc -o conftest -g -O2 conftest.c conftstm.o >&5

configure:8179: $? = 0

configure:8217: result: ok

configure:8254: checking for sysroot

configure:8284: result: no

configure:8361: gcc -c -g -O2 conftest.c >&5

configure:8364: $? = 0

configure:8527: checking for mt

configure:8543: found /bin/mt

configure:8554: result: mt

configure:8577: checking if mt is a manifest tool

configure:8583: mt '-?'

configure:8591: result: no

configure:9223: checking how to run the C preprocessor

configure:9254: gcc -E conftest.c

configure:9254: $? = 0

configure:9268: gcc -E conftest.c

conftest.c:21:28: fatal error: ac_nonexistent.h: No such file or directory

compilation terminated.

configure:9268: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| #define USE_EXTREME_NUMBERS 1

| #define TEMP_LARGE "."

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:9293: result: gcc -E

configure:9313: gcc -E conftest.c

configure:9313: $? = 0

configure:9327: gcc -E conftest.c

conftest.c:21:28: fatal error: ac_nonexistent.h: No such file or directory

compilation terminated.

configure:9327: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| #define USE_EXTREME_NUMBERS 1

| #define TEMP_LARGE "."

| /* end confdefs.h. */

| #include <ac_nonexistent.h>

configure:9356: checking for ANSI C header files

configure:9376: gcc -c -g -O2 conftest.c >&5

configure:9376: $? = 0

configure:9449: gcc -o conftest -g -O2 conftest.c >&5

configure:9449: $? = 0

configure:9449: ./conftest

configure:9449: $? = 0

configure:9460: result: yes

configure:9473: checking for sys/types.h

configure:9473: gcc -c -g -O2 conftest.c >&5

configure:9473: $? = 0

configure:9473: result: yes

configure:9473: checking for sys/stat.h

configure:9473: gcc -c -g -O2 conftest.c >&5

configure:9473: $? = 0

configure:9473: result: yes

configure:9473: checking for stdlib.h

configure:9473: gcc -c -g -O2 conftest.c >&5

configure:9473: $? = 0

configure:9473: result: yes

configure:9473: checking for string.h

configure:9473: gcc -c -g -O2 conftest.c >&5

configure:9473: $? = 0

configure:9473: result: yes

configure:9473: checking for memory.h

configure:9473: gcc -c -g -O2 conftest.c >&5

configure:9473: $? = 0

configure:9473: result: yes

configure:9473: checking for strings.h

configure:9473: gcc -c -g -O2 conftest.c >&5

configure:9473: $? = 0

configure:9473: result: yes

configure:9473: checking for inttypes.h

configure:9473: gcc -c -g -O2 conftest.c >&5

configure:9473: $? = 0

configure:9473: result: yes

configure:9473: checking for stdint.h

configure:9473: gcc -c -g -O2 conftest.c >&5

configure:9473: $? = 0

configure:9473: result: yes

configure:9473: checking for unistd.h

configure:9473: gcc -c -g -O2 conftest.c >&5

configure:9473: $? = 0

configure:9473: result: yes

configure:9487: checking for dlfcn.h

configure:9487: gcc -c -g -O2 conftest.c >&5

configure:9487: $? = 0

configure:9487: result: yes

configure:9972: checking for objdir

configure:9987: result: .libs

configure:10258: checking if gcc supports -fno-rtti -fno-exceptions

configure:10276: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5

cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]

configure:10280: $? = 0

configure:10293: result: no

configure:10603: checking for gcc option to produce PIC

configure:10610: result: -fPIC -DPIC

configure:10618: checking if gcc PIC flag -fPIC -DPIC works

configure:10636: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5

configure:10640: $? = 0

configure:10653: result: yes

configure:10682: checking if gcc static flag -static works

configure:10710: result: yes

configure:10725: checking if gcc supports -c -o file.o

configure:10746: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5

configure:10750: $? = 0

configure:10772: result: yes

configure:10780: checking if gcc supports -c -o file.o

configure:10827: result: yes

configure:10860: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries

configure:12018: result: yes

configure:12055: checking whether -lc should be explicitly linked in

configure:12063: gcc -c -g -O2 conftest.c >&5

configure:12066: $? = 0

configure:12081: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1

configure:12084: $? = 0

configure:12098: result: no

configure:12263: checking dynamic linker characteristics

configure:12777: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5

configure:12777: $? = 0

configure:12999: result: GNU/Linux ld.so

configure:13106: checking how to hardcode library paths into programs

configure:13131: result: immediate

configure:13671: checking whether stripping libraries is possible

configure:13676: result: yes

configure:13711: checking if libtool supports shared libraries

configure:13713: result: yes

configure:13716: checking whether to build shared libraries

configure:13737: result: yes

configure:13740: checking whether to build static libraries

configure:13744: result: yes

configure:13788: finding other utilities

configure:13796: checking for doxygen

configure:13826: result: no

configure:13835: WARNING: Doxygen not found - documentation will not be built

configure:13862: checking for special C compiler options needed for large files

configure:13907: result: no

configure:13913: checking for _FILE_OFFSET_BITS value needed for large files

configure:13938: gcc -c -g -O2 conftest.c >&5

configure:13938: $? = 0

configure:13970: result: no

configure:14054: displaying some results

configure:14060: checking CPPFLAGS

configure:14062: result:

configure:14064: checking CC CFLAGS

configure:14066: result: gcc -g -O2

configure:14069: checking type gcc

configure:14071: result: gcc is /usr/bin/gcc

configure:14074: checking CXX

configure:14089: result: unset

configure:14093: checking FC

configure:14108: result: unset

configure:14112: checking F90

configure:14127: result: unset

configure:14131: checking AR

configure:14134: result: ar

configure:14136: checking AR_FLAGS

configure:14138: result: cru

configure:14141: checking type ar

configure:14143: result: ar is /usr/bin/ar

configure:14150: checking NM

configure:14153: result: /usr/bin/nm -B

configure:14155: checking NMFLAGS

configure:14157: result:

configure:14172: checking types, headers, and functions

configure:14175: checking for stdlib.h

configure:14175: result: yes

configure:14185: checking for sys/types.h

configure:14185: result: yes

configure:14197: checking sys/param.h usability

configure:14197: gcc -c -g -O2 conftest.c >&5

configure:14197: $? = 0

configure:14197: result: yes

configure:14197: checking sys/param.h presence

configure:14197: gcc -E conftest.c

configure:14197: $? = 0

configure:14197: result: yes

configure:14197: checking for sys/param.h

configure:14197: result: yes

configure:14211: checking for dirent.h that defines DIR

configure:14230: gcc -c -g -O2 conftest.c >&5

configure:14230: $? = 0

configure:14238: result: yes

configure:14251: checking for library containing opendir

configure:14282: gcc -o conftest -g -O2 conftest.c >&5

configure:14282: $? = 0

configure:14299: result: none required

configure:14366: checking for ANSI C header files

configure:14470: result: yes

configure:14478: checking for sys/wait.h that is POSIX.1 compatible

configure:14504: gcc -c -g -O2 conftest.c >&5

configure:14504: $? = 0

configure:14511: result: yes

configure:14519: checking whether time.h and sys/time.h may both be included

configure:14539: gcc -c -g -O2 conftest.c >&5

configure:14539: $? = 0

configure:14546: result: yes

configure:14558: checking locale.h usability

configure:14558: gcc -c -g -O2 conftest.c >&5

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking locale.h presence

configure:14558: gcc -E conftest.c

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking for locale.h

configure:14558: result: yes

configure:14558: checking stdio.h usability

configure:14558: gcc -c -g -O2 conftest.c >&5

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking stdio.h presence

configure:14558: gcc -E conftest.c

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking for stdio.h

configure:14558: result: yes

configure:14558: checking stdarg.h usability

configure:14558: gcc -c -g -O2 conftest.c >&5

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking stdarg.h presence

configure:14558: gcc -E conftest.c

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking for stdarg.h

configure:14558: result: yes

configure:14558: checking errno.h usability

configure:14558: gcc -c -g -O2 conftest.c >&5

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking errno.h presence

configure:14558: gcc -E conftest.c

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking for errno.h

configure:14558: result: yes

configure:14558: checking ctype.h usability

configure:14558: gcc -c -g -O2 conftest.c >&5

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking ctype.h presence

configure:14558: gcc -E conftest.c

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking for ctype.h

configure:14558: result: yes

configure:14558: checking fcntl.h usability

configure:14558: gcc -c -g -O2 conftest.c >&5

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking fcntl.h presence

configure:14558: gcc -E conftest.c

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking for fcntl.h

configure:14558: result: yes

configure:14558: checking malloc.h usability

configure:14558: gcc -c -g -O2 conftest.c >&5

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking malloc.h presence

configure:14558: gcc -E conftest.c

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking for malloc.h

configure:14558: result: yes

configure:14558: checking for stdlib.h

configure:14558: result: yes

configure:14558: checking for string.h

configure:14558: result: yes

configure:14558: checking for strings.h

configure:14558: result: yes

configure:14558: checking for unistd.h

configure:14558: result: yes

configure:14558: checking for sys/stat.h

configure:14558: result: yes

configure:14558: checking getopt.h usability

configure:14558: gcc -c -g -O2 conftest.c >&5

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking getopt.h presence

configure:14558: gcc -E conftest.c

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking for getopt.h

configure:14558: result: yes

configure:14558: checking sys/time.h usability

configure:14558: gcc -c -g -O2 conftest.c >&5

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking sys/time.h presence

configure:14558: gcc -E conftest.c

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking for sys/time.h

configure:14558: result: yes

configure:14558: checking sys/resource.h usability

configure:14558: gcc -c -g -O2 conftest.c >&5

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking sys/resource.h presence

configure:14558: gcc -E conftest.c

configure:14558: $? = 0

configure:14558: result: yes

configure:14558: checking for sys/resource.h

configure:14558: result: yes

configure:14570: checking for vprintf

configure:14570: gcc -o conftest -g -O2 conftest.c >&5

conftest.c:76:6: warning: conflicting types for built-in function 'vprintf' [enabled by default]

configure:14570: $? = 0

configure:14570: result: yes

configure:14576: checking for _doprnt

configure:14576: gcc -o conftest -g -O2 conftest.c >&5

/tmp/cc0lL8kA.o: In function `main':

/home/daniel/libs4cdo-0.0.10/netcdf-4.2/conftest.c:88: undefined reference to `_doprnt'

collect2: ld returned 1 exit status

configure:14576: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| #define USE_EXTREME_NUMBERS 1

| #define TEMP_LARGE "."

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_DIRENT_H 1

| #define STDC_HEADERS 1

| #define HAVE_SYS_WAIT_H 1

| #define TIME_WITH_SYS_TIME 1

| #define HAVE_LOCALE_H 1

| #define HAVE_STDIO_H 1

| #define HAVE_STDARG_H 1

| #define HAVE_ERRNO_H 1

| #define HAVE_CTYPE_H 1

| #define HAVE_FCNTL_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_GETOPT_H 1

| #define HAVE_SYS_TIME_H 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_VPRINTF 1

| /* end confdefs.h. */

| /* Define _doprnt to an innocuous variant, in case <limits.h> declares _doprnt.

| For example, HP-UX 11i <limits.h> declares gettimeofday. */

| #define _doprnt innocuous__doprnt

|

| /* System header to define __stub macros and hopefully few prototypes,

| which can conflict with char _doprnt (); below.

| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since

| <limits.h> exists even on freestanding compilers. */

|

| #ifdef __STDC__

| # include <limits.h>

| #else

| # include <assert.h>

| #endif

|

| #undef _doprnt

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char _doprnt ();

| /* The GNU C library defines this for functions which it implements

| to always fail with ENOSYS. Some functions are actually named

| something starting with __ and the normal name is an alias. */

| #if defined __stub__doprnt || defined __stub____doprnt

| choke me

| #endif

|

| int

| main ()

| {

| return _doprnt ();

| ;

| return 0;

| }

configure:14576: result: no

configure:14589: checking for stdbool.h that conforms to C99

configure:14656: gcc -c -g -O2 conftest.c >&5

configure:14656: $? = 0

configure:14663: result: yes

configure:14665: checking for _Bool

configure:14665: gcc -c -g -O2 conftest.c >&5

configure:14665: $? = 0

configure:14665: gcc -c -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:90:20: error: expected expression before ')' token

configure:14665: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| #define USE_EXTREME_NUMBERS 1

| #define TEMP_LARGE "."

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_DIRENT_H 1

| #define STDC_HEADERS 1

| #define HAVE_SYS_WAIT_H 1

| #define TIME_WITH_SYS_TIME 1

| #define HAVE_LOCALE_H 1

| #define HAVE_STDIO_H 1

| #define HAVE_STDARG_H 1

| #define HAVE_ERRNO_H 1

| #define HAVE_CTYPE_H 1

| #define HAVE_FCNTL_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_GETOPT_H 1

| #define HAVE_SYS_TIME_H 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_VPRINTF 1

| /* end confdefs.h. */

| #include <stdio.h>

| #ifdef HAVE_SYS_TYPES_H

| # include <sys/types.h>

| #endif

| #ifdef HAVE_SYS_STAT_H

| # include <sys/stat.h>

| #endif

| #ifdef STDC_HEADERS

| # include <stdlib.h>

| # include <stddef.h>

| #else

| # ifdef HAVE_STDLIB_H

| # include <stdlib.h>

| # endif

| #endif

| #ifdef HAVE_STRING_H

| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H

| # include <memory.h>

| # endif

| # include <string.h>

| #endif

| #ifdef HAVE_STRINGS_H

| # include <strings.h>

| #endif

| #ifdef HAVE_INTTYPES_H

| # include <inttypes.h>

| #endif

| #ifdef HAVE_STDINT_H

| # include <stdint.h>

| #endif

| #ifdef HAVE_UNISTD_H

| # include <unistd.h>

| #endif

| int

| main ()

| {

| if (sizeof ((_Bool)))

| return 0;

| ;

| return 0;

| }

configure:14665: result: yes

configure:14689: checking for strlcat

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

/tmp/ccwgQvIY.o: In function `main':

/home/daniel/libs4cdo-0.0.10/netcdf-4.2/conftest.c:90: undefined reference to `strlcat'

collect2: ld returned 1 exit status

configure:14689: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| #define USE_EXTREME_NUMBERS 1

| #define TEMP_LARGE "."

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_DIRENT_H 1

| #define STDC_HEADERS 1

| #define HAVE_SYS_WAIT_H 1

| #define TIME_WITH_SYS_TIME 1

| #define HAVE_LOCALE_H 1

| #define HAVE_STDIO_H 1

| #define HAVE_STDARG_H 1

| #define HAVE_ERRNO_H 1

| #define HAVE_CTYPE_H 1

| #define HAVE_FCNTL_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_GETOPT_H 1

| #define HAVE_SYS_TIME_H 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_VPRINTF 1

| #define HAVE__BOOL 1

| #define HAVE_STDBOOL_H 1

| /* end confdefs.h. */

| /* Define strlcat to an innocuous variant, in case <limits.h> declares strlcat.

| For example, HP-UX 11i <limits.h> declares gettimeofday. */

| #define strlcat innocuous_strlcat

|

| /* System header to define __stub macros and hopefully few prototypes,

| which can conflict with char strlcat (); below.

| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since

| <limits.h> exists even on freestanding compilers. */

|

| #ifdef __STDC__

| # include <limits.h>

| #else

| # include <assert.h>

| #endif

|

| #undef strlcat

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char strlcat ();

| /* The GNU C library defines this for functions which it implements

| to always fail with ENOSYS. Some functions are actually named

| something starting with __ and the normal name is an alias. */

| #if defined __stub_strlcat || defined __stub___strlcat

| choke me

| #endif

|

| int

| main ()

| {

| return strlcat ();

| ;

| return 0;

| }

configure:14689: result: no

configure:14689: checking for strerror

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for snprintf

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

conftest.c:80:6: warning: conflicting types for built-in function 'snprintf' [enabled by default]

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for strchr

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

conftest.c:81:6: warning: conflicting types for built-in function 'strchr' [enabled by default]

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for strrchr

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

conftest.c:82:6: warning: conflicting types for built-in function 'strrchr' [enabled by default]

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for strcat

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

conftest.c:83:6: warning: conflicting types for built-in function 'strcat' [enabled by default]

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for strcpy

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

conftest.c:84:6: warning: conflicting types for built-in function 'strcpy' [enabled by default]

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for strdup

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

conftest.c:85:6: warning: conflicting types for built-in function 'strdup' [enabled by default]

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for strcasecmp

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

conftest.c:86:6: warning: conflicting types for built-in function 'strcasecmp' [enabled by default]

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for strtod

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for strtoll

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for strtoull

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for strstr

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

conftest.c:90:6: warning: conflicting types for built-in function 'strstr' [enabled by default]

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for mkstemp

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for getpid

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for getrlimit

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for gettimeofday

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for fsync

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

configure:14689: $? = 0

configure:14689: result: yes

configure:14689: checking for MPI_Comm_f2c

configure:14689: gcc -o conftest -g -O2 conftest.c >&5

/tmp/ccGLWr9b.o: In function `main':

/home/daniel/libs4cdo-0.0.10/netcdf-4.2/conftest.c:107: undefined reference to `MPI_Comm_f2c'

collect2: ld returned 1 exit status

configure:14689: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| #define USE_EXTREME_NUMBERS 1

| #define TEMP_LARGE "."

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_DIRENT_H 1

| #define STDC_HEADERS 1

| #define HAVE_SYS_WAIT_H 1

| #define TIME_WITH_SYS_TIME 1

| #define HAVE_LOCALE_H 1

| #define HAVE_STDIO_H 1

| #define HAVE_STDARG_H 1

| #define HAVE_ERRNO_H 1

| #define HAVE_CTYPE_H 1

| #define HAVE_FCNTL_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_GETOPT_H 1

| #define HAVE_SYS_TIME_H 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_VPRINTF 1

| #define HAVE__BOOL 1

| #define HAVE_STDBOOL_H 1

| #define HAVE_STRERROR 1

| #define HAVE_SNPRINTF 1

| #define HAVE_STRCHR 1

| #define HAVE_STRRCHR 1

| #define HAVE_STRCAT 1

| #define HAVE_STRCPY 1

| #define HAVE_STRDUP 1

| #define HAVE_STRCASECMP 1

| #define HAVE_STRTOD 1

| #define HAVE_STRTOLL 1

| #define HAVE_STRTOULL 1

| #define HAVE_STRSTR 1

| #define HAVE_MKSTEMP 1

| #define HAVE_GETPID 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETTIMEOFDAY 1

| #define HAVE_FSYNC 1

| /* end confdefs.h. */

| /* Define MPI_Comm_f2c to an innocuous variant, in case <limits.h> declares MPI_Comm_f2c.

| For example, HP-UX 11i <limits.h> declares gettimeofday. */

| #define MPI_Comm_f2c innocuous_MPI_Comm_f2c

|

| /* System header to define __stub macros and hopefully few prototypes,

| which can conflict with char MPI_Comm_f2c (); below.

| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since

| <limits.h> exists even on freestanding compilers. */

|

| #ifdef __STDC__

| # include <limits.h>

| #else

| # include <assert.h>

| #endif

|

| #undef MPI_Comm_f2c

|

| /* Override any GCC internal prototype to avoid an error.

| Use char because int might match the return type of a GCC

| builtin and then its argument prototype would still apply. */

| #ifdef __cplusplus

| extern "C"

| #endif

| char MPI_Comm_f2c ();

| /* The GNU C library defines this for functions which it implements

| to always fail with ENOSYS. Some functions are actually named

| something starting with __ and the normal name is an alias. */

| #if defined __stub_MPI_Comm_f2c || defined __stub___MPI_Comm_f2c

| choke me

| #endif

|

| int

| main ()

| {

| return MPI_Comm_f2c ();

| ;

| return 0;

| }

configure:14689: result: no

configure:14698: checking for size_t

configure:14698: gcc -c -g -O2 conftest.c >&5

configure:14698: $? = 0

configure:14698: gcc -c -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:109:21: error: expected expression before ')' token

configure:14698: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| #define USE_EXTREME_NUMBERS 1

| #define TEMP_LARGE "."

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_DIRENT_H 1

| #define STDC_HEADERS 1

| #define HAVE_SYS_WAIT_H 1

| #define TIME_WITH_SYS_TIME 1

| #define HAVE_LOCALE_H 1

| #define HAVE_STDIO_H 1

| #define HAVE_STDARG_H 1

| #define HAVE_ERRNO_H 1

| #define HAVE_CTYPE_H 1

| #define HAVE_FCNTL_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_GETOPT_H 1

| #define HAVE_SYS_TIME_H 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_VPRINTF 1

| #define HAVE__BOOL 1

| #define HAVE_STDBOOL_H 1

| #define HAVE_STRERROR 1

| #define HAVE_SNPRINTF 1

| #define HAVE_STRCHR 1

| #define HAVE_STRRCHR 1

| #define HAVE_STRCAT 1

| #define HAVE_STRCPY 1

| #define HAVE_STRDUP 1

| #define HAVE_STRCASECMP 1

| #define HAVE_STRTOD 1

| #define HAVE_STRTOLL 1

| #define HAVE_STRTOULL 1

| #define HAVE_STRSTR 1

| #define HAVE_MKSTEMP 1

| #define HAVE_GETPID 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETTIMEOFDAY 1

| #define HAVE_FSYNC 1

| /* end confdefs.h. */

| #include <stdio.h>

| #ifdef HAVE_SYS_TYPES_H

| # include <sys/types.h>

| #endif

| #ifdef HAVE_SYS_STAT_H

| # include <sys/stat.h>

| #endif

| #ifdef STDC_HEADERS

| # include <stdlib.h>

| # include <stddef.h>

| #else

| # ifdef HAVE_STDLIB_H

| # include <stdlib.h>

| # endif

| #endif

| #ifdef HAVE_STRING_H

| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H

| # include <memory.h>

| # endif

| # include <string.h>

| #endif

| #ifdef HAVE_STRINGS_H

| # include <strings.h>

| #endif

| #ifdef HAVE_INTTYPES_H

| # include <inttypes.h>

| #endif

| #ifdef HAVE_STDINT_H

| # include <stdint.h>

| #endif

| #ifdef HAVE_UNISTD_H

| # include <unistd.h>

| #endif

| int

| main ()

| {

| if (sizeof ((size_t)))

| return 0;

| ;

| return 0;

| }

configure:14698: result: yes

configure:14711: checking for working alloca.h

configure:14728: gcc -o conftest -g -O2 conftest.c >&5

configure:14728: $? = 0

configure:14736: result: yes

configure:14744: checking for alloca

configure:14781: gcc -o conftest -g -O2 conftest.c >&5

configure:14781: $? = 0

configure:14789: result: yes

configure:14898: checking whether isnan is declared

configure:14898: gcc -c -g -O2 conftest.c >&5

configure:14898: $? = 0

configure:14898: result: yes

configure:14909: checking whether isinf is declared

configure:14909: gcc -c -g -O2 conftest.c >&5

configure:14909: $? = 0

configure:14909: result: yes

configure:14920: checking whether isfinite is declared

configure:14920: gcc -c -g -O2 conftest.c >&5

configure:14920: $? = 0

configure:14920: result: yes

configure:14931: checking whether signbit is declared

configure:14931: gcc -c -g -O2 conftest.c >&5

configure:14931: $? = 0

configure:14931: result: yes

configure:14943: checking for struct stat.st_blksize

configure:14943: gcc -c -g -O2 conftest.c >&5

configure:14943: $? = 0

configure:14943: result: yes

configure:14957: checking for IEEE floating point format

configure:14995: gcc -o conftest -g -O2 conftest.c >&5

configure:14995: $? = 0

configure:14995: ./conftest

configure:14995: $? = 0

configure:15004: result: yes

configure:15012: checking for size_t

configure:15012: result: yes

configure:15023: checking for off_t

configure:15023: gcc -c -g -O2 conftest.c >&5

configure:15023: $? = 0

configure:15023: gcc -c -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:117:20: error: expected expression before ')' token

configure:15023: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| #define USE_EXTREME_NUMBERS 1

| #define TEMP_LARGE "."

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_DIRENT_H 1

| #define STDC_HEADERS 1

| #define HAVE_SYS_WAIT_H 1

| #define TIME_WITH_SYS_TIME 1

| #define HAVE_LOCALE_H 1

| #define HAVE_STDIO_H 1

| #define HAVE_STDARG_H 1

| #define HAVE_ERRNO_H 1

| #define HAVE_CTYPE_H 1

| #define HAVE_FCNTL_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_GETOPT_H 1

| #define HAVE_SYS_TIME_H 1

| #define HAVE_SYS_RESOURCE_H 1

| #define HAVE_VPRINTF 1

| #define HAVE__BOOL 1

| #define HAVE_STDBOOL_H 1

| #define HAVE_STRERROR 1

| #define HAVE_SNPRINTF 1

| #define HAVE_STRCHR 1

| #define HAVE_STRRCHR 1

| #define HAVE_STRCAT 1

| #define HAVE_STRCPY 1

| #define HAVE_STRDUP 1

| #define HAVE_STRCASECMP 1

| #define HAVE_STRTOD 1

| #define HAVE_STRTOLL 1

| #define HAVE_STRTOULL 1

| #define HAVE_STRSTR 1

| #define HAVE_MKSTEMP 1

| #define HAVE_GETPID 1

| #define HAVE_GETRLIMIT 1

| #define HAVE_GETTIMEOFDAY 1

| #define HAVE_FSYNC 1

| #define HAVE_ALLOCA_H 1

| #define HAVE_ALLOCA 1

| #define HAVE_DECL_ISNAN 1

| #define HAVE_DECL_ISINF 1

| #define HAVE_DECL_ISFINITE 1

| #define HAVE_DECL_SIGNBIT 1

| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1

| #define HAVE_ST_BLKSIZE 1

| /* end confdefs.h. */

| #include <stdio.h>

| #ifdef HAVE_SYS_TYPES_H

| # include <sys/types.h>

| #endif

| #ifdef HAVE_SYS_STAT_H

| # include <sys/stat.h>

| #endif

| #ifdef STDC_HEADERS

| # include <stdlib.h>

| # include <stddef.h>

| #else

| # ifdef HAVE_STDLIB_H

| # include <stdlib.h>

| # endif

| #endif

| #ifdef HAVE_STRING_H

| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H

| # include <memory.h>

| # endif

| # include <string.h>

| #endif

| #ifdef HAVE_STRINGS_H

| # include <strings.h>

| #endif

| #ifdef HAVE_INTTYPES_H

| # include <inttypes.h>

| #endif

| #ifdef HAVE_STDINT_H

| # include <stdint.h>

| #endif

| #ifdef HAVE_UNISTD_H

| # include <unistd.h>

| #endif

| int

| main ()

| {

| if (sizeof ((off_t)))

| return 0;

| ;

| return 0;

| }

configure:15023: result: yes

configure:15034: checking for ssize_t

configure:15034: gcc -c -g -O2 conftest.c >&5

configure:15034: $? = 0

configure:15034: gcc -c -g -O2 conftest.c >&5

conftest.c: In function 'main':

conftest.c:117:22: error: expected expression before ')' token

configure:15034: $? = 1

configure: failed program was:

| /* confdefs.h */

| #define PACKAGE_NAME "netCDF"

| #define PACKAGE_TARNAME "netcdf"

| #define PACKAGE_VERSION "4.2"

| #define PACKAGE_STRING "netCDF 4.2"

| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"

| #define PACKAGE_URL ""

| #define PACKAGE "netcdf"

| #define VERSION "4.2"

| #define NCIO_MINBLOCKSIZE 256

| #define USE_FSYNC 1

| #define DEFAULT_CHUNK_SIZE 4194304

| #define MAX_DEFAULT_CACHE_SIZE 67108864

| #define DEFAULT_CHUNKS_IN_CACHE 10

| #define CHUNK_CACHE_SIZE 4194304

| #define CHUNK_CACHE_NELEMS 1009

| #define CHUNK_CACHE_PREEMPTION 0.75

| #define USE_EXTREME_NUMBERS 1

| #define TEMP_LARGE "."

| #define STDC_HEADERS 1

| #define HAVE_SYS_TYPES_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_MEMORY_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_INTTYPES_H 1

| #define HAVE_STDINT_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_DLFCN_H 1

| #define LT_OBJDIR ".libs/"

| #define HAVE_SYS_PARAM_H 1

| #define HAVE_DIRENT_H 1

| #define STDC_HEADERS 1

| #define HAVE_SYS_WAIT_H 1

| #define TIME_WITH_SYS_TIME 1

| #define HAVE_LOCALE_H 1

| #define HAVE_STDIO_H 1

| #define HAVE_STDARG_H 1

| #define HAVE_ERRNO_H 1

| #define HAVE_CTYPE_H 1

| #define HAVE_FCNTL_H 1

| #define HAVE_MALLOC_H 1

| #define HAVE_STDLIB_H 1

| #define HAVE_STRING_H 1

| #define HAVE_STRINGS_H 1

| #define HAVE_UNISTD_H 1

| #define HAVE_SYS_STAT_H 1

| #define HAVE_GETOPT_H 1

| #define HAVE_SYS_TIME_H 1